RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 BHLHE41Q9C0J9 482 aaPredicted RBP7.64□□□□□ -1.19
SMC4-220ENST00000488017 PRKAG2Q9UGJ0 569 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 SEPT3Q9UH03 358 aa7.64□□□□□ -1.19
SMC4-220ENST00000488017 DLGAP3O95886 979 aa7.63□□□□□ -1.19
SMC4-220ENST00000488017 EDN3P14138 238 aa7.63□□□□□ -1.19
SMC4-220ENST00000488017 DRD2P14416 443 aa7.63□□□□□ -1.19
SMC4-220ENST00000488017 C8orf34Q49A92 452 aa7.63□□□□□ -1.19
SMC4-220ENST00000488017 NOM1Q5C9Z4 860 aaKnown RBP7.63□□□□□ -1.19
SMC4-220ENST00000488017 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.62□□□□□ -1.19
SMC4-220ENST00000488017 BIN1O00499 593 aa7.62□□□□□ -1.19
SMC4-220ENST00000488017 ZNF865P0CJ78 1059 aaPredicted RBP7.62□□□□□ -1.19
SMC4-220ENST00000488017 ESRRAP11474 423 aaPredicted RBP7.62□□□□□ -1.19
SMC4-220ENST00000488017 ATP2B4P23634 1241 aa7.62□□□□□ -1.19
SMC4-220ENST00000488017 ADMP35318 185 aa7.62□□□□□ -1.19
SMC4-220ENST00000488017 CYP27A1Q02318 531 aa7.61□□□□□ -1.19
SMC4-220ENST00000488017 DUSP27Q5VZP5 1158 aa7.61□□□□□ -1.19
SMC4-220ENST00000488017 GATA6Q92908 595 aa7.61□□□□□ -1.19
SMC4-220ENST00000488017 NCANO14594 1321 aa7.6□□□□□ -1.19
SMC4-220ENST00000488017 A6NHS1 94 aa7.6□□□□□ -1.19
SMC4-220ENST00000488017 GSTM4Q03013 218 aa7.6□□□□□ -1.19
SMC4-220ENST00000488017 MAP7Q14244 749 aa7.6□□□□□ -1.19
SMC4-220ENST00000488017 KSR1Q8IVT5 923 aa7.6□□□□□ -1.19
SMC4-220ENST00000488017 SLAIN2Q9P270 581 aa7.6□□□□□ -1.19
SMC4-220ENST00000488017 FAM170BA6NMN3 283 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 PRRG2O14669 202 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 EREGO14944 169 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 PHACTR2O75167 634 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 HP1BP3Q5SSJ5 553 aaPredicted RBP7.59□□□□□ -1.19
SMC4-220ENST00000488017 ALKBH2Q6NS38 261 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 ASAP3Q8TDY4 903 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 SNX29Q8TEQ0 813 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 KRTAP9-3Q9BYQ3 159 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 NRSN2Q9GZP1 204 aa7.59□□□□□ -1.19
SMC4-220ENST00000488017 TNFRSF21O75509 655 aa7.58□□□□□ -1.2
SMC4-220ENST00000488017 ADH5P11766 374 aa7.58□□□□□ -1.2
SMC4-220ENST00000488017 EIF1AXP47813 144 aaKnown RBP7.58□□□□□ -1.2
SMC4-220ENST00000488017 EHHADHQ08426 723 aa7.58□□□□□ -1.2
SMC4-220ENST00000488017 LILRA6Q6PI73 481 aa7.58□□□□□ -1.2
SMC4-220ENST00000488017 ZC3H7BQ9UGR2 993 aaKnown RBP7.58□□□□□ -1.2
SMC4-220ENST00000488017 ZFYVE1Q9HBF4 777 aa7.57□□□□□ -1.2
SMC4-220ENST00000488017 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.56□□□□□ -1.2
SMC4-220ENST00000488017 MPSTP25325 297 aa7.56□□□□□ -1.2
SMC4-220ENST00000488017 USP5P45974 858 aa7.56□□□□□ -1.2
SMC4-220ENST00000488017 PBXIP1Q96AQ6 731 aa7.56□□□□□ -1.2
SMC4-220ENST00000488017 POLIQ9UNA4 740 aa7.56□□□□□ -1.2
SMC4-220ENST00000488017 ACTL7BQ9Y614 415 aa7.56□□□□□ -1.2
SMC4-220ENST00000488017 CYP11A1P05108 521 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 NFICP08651 508 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 PEAR1Q5VY43 1037 aaPredicted RBP7.55□□□□□ -1.2
SMC4-220ENST00000488017 CILP2Q8IUL8 1156 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 STK11IPQ8N1F8 1099 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 SLC38A3Q99624 504 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 SEMA6CQ9H3T2 930 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 LRRC4CQ9HCJ2 640 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 SLC5A6Q9Y289 635 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 AMOTL2Q9Y2J4 779 aa7.55□□□□□ -1.2
SMC4-220ENST00000488017 ZNF792Q3KQV3 632 aa7.54□□□□□ -1.2
SMC4-220ENST00000488017 ZNF765Q7L2R6 523 aa7.54□□□□□ -1.2
SMC4-220ENST00000488017 ATG4DQ86TL0 474 aaPredicted RBP7.54□□□□□ -1.2
SMC4-220ENST00000488017 BHLHE22Q8NFJ8 381 aaPredicted RBP7.54□□□□□ -1.2
SMC4-220ENST00000488017 TMEM40Q8WWA1 233 aa7.54□□□□□ -1.2
SMC4-220ENST00000488017 ACSS3Q9H6R3 686 aa7.54□□□□□ -1.2
SMC4-220ENST00000488017 B8ZZF3 427 aa7.53□□□□□ -1.2
SMC4-220ENST00000488017 NPR3P17342 541 aa7.53□□□□□ -1.2
SMC4-220ENST00000488017 RAB6AP20340 208 aa7.53□□□□□ -1.2
SMC4-220ENST00000488017 BCL7CQ8WUZ0 217 aaPredicted RBP7.53□□□□□ -1.2
SMC4-220ENST00000488017 CLEC4MQ9H2X3 399 aaPredicted RBP7.53□□□□□ -1.2
SMC4-220ENST00000488017 GSX1Q9H4S2 264 aaPredicted RBP7.53□□□□□ -1.2
SMC4-220ENST00000488017 FOXD3Q9UJU5 478 aaPredicted RBP7.53□□□□□ -1.2
SMC4-220ENST00000488017 MAOBP27338 520 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 PCDH1Q08174 1060 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 POU4F3Q15319 338 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 SEZ6L2Q6UXD5 910 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 GTF3C2Q8WUA4 911 aaPredicted RBP7.52□□□□□ -1.21
SMC4-220ENST00000488017 FAM168AQ92567 244 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 MISP3Q96FF7 219 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 ZFYVE28Q9HCC9 887 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 LATS2Q9NRM7 1088 aa7.52□□□□□ -1.21
SMC4-220ENST00000488017 A0A096LPE4 126 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 A0A1W2PPZ6 126 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 PLCL1Q15111 1095 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 ZNF423Q2M1K9 1284 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 OGFOD3Q6PK18 319 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 DYMQ7RTS9 669 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 C1GALT1Q9NS00 363 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 RAD18Q9NS91 495 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 FAM105AQ9NUU6 356 aa7.51□□□□□ -1.21
SMC4-220ENST00000488017 METTL12A8MUP2 240 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 ASPAP45381 313 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 MESP2Q0VG99 397 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 AKAP4Q5JQC9 854 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 WFDC3Q8IUB2 231 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 CCNJLQ8IV13 435 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 DDX54Q8TDD1 881 aaKnown RBP7.5□□□□□ -1.21
SMC4-220ENST00000488017 FAM84AQ96KN4 292 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 SYNGAP1Q96PV0 1343 aa7.5□□□□□ -1.21
SMC4-220ENST00000488017 FAM13AO94988 1023 aa7.49□□□□□ -1.21
SMC4-220ENST00000488017 CTSBP07858 339 aa7.49□□□□□ -1.21
SMC4-220ENST00000488017 AAMPQ13685 434 aa7.49□□□□□ -1.21
SMC4-220ENST00000488017 CYP27C1Q4G0S4 372 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms