RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 CRKP46108 304 aa24.6■■□□□ 1.53
SMPDL3A-202ENST00000487215 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.6■■□□□ 1.53
SMPDL3A-202ENST00000487215 CNKSR2Q8WXI2 1034 aa24.6■■□□□ 1.53
SMPDL3A-202ENST00000487215 ARMC5Q96C12 935 aa24.6■■□□□ 1.53
SMPDL3A-202ENST00000487215 GCC1Q96CN9 775 aa24.6■■□□□ 1.53
SMPDL3A-202ENST00000487215 SUCLG2Q96I99 432 aa24.6■■□□□ 1.53
SMPDL3A-202ENST00000487215 RBBP6Q7Z6E9 1792 aaKnown RBP24.59■■□□□ 1.53
SMPDL3A-202ENST00000487215 TCP10L2B9ZVM9 353 aa24.59■■□□□ 1.53
SMPDL3A-202ENST00000487215 SLC4A10Q6U841 1118 aa24.59■■□□□ 1.53
SMPDL3A-202ENST00000487215 KAZALD1Q96I82 304 aa24.59■■□□□ 1.53
SMPDL3A-202ENST00000487215 SRCIN1Q9C0H9 1055 aa24.59■■□□□ 1.53
SMPDL3A-202ENST00000487215 TMEM39BQ9GZU3 492 aa24.59■■□□□ 1.53
SMPDL3A-202ENST00000487215 VGLL4Q14135 290 aa24.58■■□□□ 1.53
SMPDL3A-202ENST00000487215 GRIK5Q16478 980 aa24.58■■□□□ 1.53
SMPDL3A-202ENST00000487215 BRI3BPQ8WY22 251 aa24.58■■□□□ 1.53
SMPDL3A-202ENST00000487215 TNNI2P48788 182 aa24.57■■□□□ 1.52
SMPDL3A-202ENST00000487215 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.57■■□□□ 1.52
SMPDL3A-202ENST00000487215 RIPOR2Q9Y4F9 1068 aa24.57■■□□□ 1.52
SMPDL3A-202ENST00000487215 CCL15-CCL14A0A0B4J2E2 113 aa24.56■■□□□ 1.52
SMPDL3A-202ENST00000487215 MAP3K9P80192 1104 aa24.56■■□□□ 1.52
SMPDL3A-202ENST00000487215 CCL15Q16663 113 aa24.56■■□□□ 1.52
SMPDL3A-202ENST00000487215 MROH5Q6ZUA9 1318 aa24.56■■□□□ 1.52
SMPDL3A-202ENST00000487215 MKI67P46013 3256 aaKnown RBP24.55■■□□□ 1.52
SMPDL3A-202ENST00000487215 NBPF7P0C2Y1 421 aaPredicted RBP24.55■■□□□ 1.52
SMPDL3A-202ENST00000487215 EN2P19622 333 aaPredicted RBP24.55■■□□□ 1.52
SMPDL3A-202ENST00000487215 GTF2A2P52657 109 aa24.55■■□□□ 1.52
SMPDL3A-202ENST00000487215 TAF1CQ15572 869 aaPredicted RBP24.55■■□□□ 1.52
SMPDL3A-202ENST00000487215 FBXO33Q7Z6M2 555 aa24.55■■□□□ 1.52
SMPDL3A-202ENST00000487215 IQSEC3Q9UPP2 1182 aaPredicted RBP24.55■■□□□ 1.52
SMPDL3A-202ENST00000487215 CENPFP49454 3210 aa24.54■■□□□ 1.52
SMPDL3A-202ENST00000487215 CHAF1AQ13111 956 aaPredicted RBP24.54■■□□□ 1.52
SMPDL3A-202ENST00000487215 VPS37DQ86XT2 251 aa24.54■■□□□ 1.52
SMPDL3A-202ENST00000487215 FAM43AQ8N2R8 423 aa24.54■■□□□ 1.52
SMPDL3A-202ENST00000487215 OTUD5Q96G74 571 aa24.54■■□□□ 1.52
SMPDL3A-202ENST00000487215 ZFYVE28Q9HCC9 887 aa24.54■■□□□ 1.52
SMPDL3A-202ENST00000487215 CSADQ9Y600 493 aa24.54■■□□□ 1.52
SMPDL3A-202ENST00000487215 CACNB3P54284 484 aa24.53■■□□□ 1.52
SMPDL3A-202ENST00000487215 UTYO14607 1347 aa24.53■■□□□ 1.52
SMPDL3A-202ENST00000487215 HDLBPQ00341 1268 aaKnown RBP24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 RABL6Q3YEC7 729 aaPredicted RBP24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 LRRC24Q50LG9 513 aa24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 HABP4Q5JVS0 413 aaKnown RBP24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 TBC1D22AQ8WUA7 517 aa24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 ZNF333Q96JL9 665 aa24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 BICC1Q9H694 974 aaKnown RBP24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 PTCH2Q9Y6C5 1203 aa24.52■■□□□ 1.52
SMPDL3A-202ENST00000487215 SPDYE5A6NIY4 337 aa24.51■■□□□ 1.51
SMPDL3A-202ENST00000487215 METTL24Q5JXM2 366 aa24.51■■□□□ 1.51
SMPDL3A-202ENST00000487215 TEKT1Q969V4 418 aa24.51■■□□□ 1.51
SMPDL3A-202ENST00000487215 SNCAIPQ9Y6H5 919 aa24.51■■□□□ 1.51
SMPDL3A-202ENST00000487215 FRAT2O75474 233 aaPredicted RBP24.5■■□□□ 1.51
SMPDL3A-202ENST00000487215 ARHGEF6Q15052 776 aa24.5■■□□□ 1.51
SMPDL3A-202ENST00000487215 CAVIN4Q5BKX8 364 aa24.5■■□□□ 1.51
SMPDL3A-202ENST00000487215 ANKRD44Q8N8A2 993 aa24.5■■□□□ 1.51
SMPDL3A-202ENST00000487215 VGLL2Q8N8G2 317 aa24.5■■□□□ 1.51
SMPDL3A-202ENST00000487215 BRCA2P51587 3418 aa24.49■■□□□ 1.51
SMPDL3A-202ENST00000487215 SLC9C1Q4G0N8 1177 aa24.49■■□□□ 1.51
SMPDL3A-202ENST00000487215 TMEM106CQ9BVX2 250 aa24.49■■□□□ 1.51
SMPDL3A-202ENST00000487215 PDE8BO95263 885 aa24.48■■□□□ 1.51
SMPDL3A-202ENST00000487215 ZDHHC15Q96MV8 337 aa24.48■■□□□ 1.51
SMPDL3A-202ENST00000487215 WRNIP1Q96S55 665 aa24.48■■□□□ 1.51
SMPDL3A-202ENST00000487215 BCAMP50895 628 aa24.47■■□□□ 1.51
SMPDL3A-202ENST00000487215 FAM83AQ86UY5 434 aa24.47■■□□□ 1.51
SMPDL3A-202ENST00000487215 ERO1BQ86YB8 467 aa24.47■■□□□ 1.51
SMPDL3A-202ENST00000487215 TMOD2Q9NZR1 351 aa24.47■■□□□ 1.51
SMPDL3A-202ENST00000487215 KIAA0100Q14667 2235 aaKnown RBP24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 ANP32CO43423 234 aa24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 CETPP11597 493 aa24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 APOBEC3HQ6NTF7 200 aaKnown RBP24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 NBPF11Q86T75 865 aa24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 KLHDC4Q8TBB5 520 aa24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 ZKSCAN4Q969J2 545 aaPredicted RBP24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 MRIQ9BWK5 157 aa24.46■■□□□ 1.51
SMPDL3A-202ENST00000487215 BTBD19C9JJ37 291 aa24.45■■□□□ 1.5
SMPDL3A-202ENST00000487215 TLR2O60603 784 aa24.45■■□□□ 1.5
SMPDL3A-202ENST00000487215 WDHD1O75717 1129 aaPredicted RBP24.45■■□□□ 1.5
SMPDL3A-202ENST00000487215 FKBP1CQ5VVH2 108 aa24.45■■□□□ 1.5
SMPDL3A-202ENST00000487215 ARHGAP39Q9C0H5 1083 aa24.45■■□□□ 1.5
SMPDL3A-202ENST00000487215 ZCCHC17Q9NP64 241 aaKnown RBP24.45■■□□□ 1.5
SMPDL3A-202ENST00000487215 RPAP1Q9BWH6 1393 aaPredicted RBP24.44■■□□□ 1.5
SMPDL3A-202ENST00000487215 MAST3O60307 1309 aa24.44■■□□□ 1.5
SMPDL3A-202ENST00000487215 IRF6O14896 467 aa24.44■■□□□ 1.5
SMPDL3A-202ENST00000487215 SNAPC2Q13487 334 aa24.44■■□□□ 1.5
SMPDL3A-202ENST00000487215 HOOK2Q96ED9 719 aa24.44■■□□□ 1.5
SMPDL3A-202ENST00000487215 SUGT1Q9Y2Z0 365 aa24.44■■□□□ 1.5
SMPDL3A-202ENST00000487215 ZSWIM8A7E2V4 1837 aa24.44■■□□□ 1.5
SMPDL3A-202ENST00000487215 KIF16BQ96L93 1317 aa24.43■■□□□ 1.5
SMPDL3A-202ENST00000487215 LACTBP83111 547 aaPredicted RBP24.43■■□□□ 1.5
SMPDL3A-202ENST00000487215 PPIL2Q13356 520 aa24.43■■□□□ 1.5
SMPDL3A-202ENST00000487215 SLC4A8Q2Y0W8 1093 aa24.43■■□□□ 1.5
SMPDL3A-202ENST00000487215 MRPL50Q8N5N7 158 aaKnown RBP24.43■■□□□ 1.5
SMPDL3A-202ENST00000487215 MYCP01106 439 aaPredicted RBP24.42■■□□□ 1.5
SMPDL3A-202ENST00000487215 FGFR2P21802 821 aa24.42■■□□□ 1.5
SMPDL3A-202ENST00000487215 KIF22Q14807 665 aa24.42■■□□□ 1.5
SMPDL3A-202ENST00000487215 PUM3Q15397 648 aaKnown RBP24.42■■□□□ 1.5
SMPDL3A-202ENST00000487215 DCAF15Q66K64 600 aa24.42■■□□□ 1.5
SMPDL3A-202ENST00000487215 HHIPL2Q6UWX4 724 aa24.42■■□□□ 1.5
SMPDL3A-202ENST00000487215 SH3TC2Q8TF17 1288 aa24.42■■□□□ 1.5
SMPDL3A-202ENST00000487215 IFIT1P09914 478 aaKnown RBP24.41■■□□□ 1.5
SMPDL3A-202ENST00000487215 FAM9BQ8IZU0 186 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms