RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 OSMRQ99650 979 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 ZKSCAN3Q9BRR0 538 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 TRIM56Q9BRZ2 755 aaKnown RBP6.05□□□□□ -1.44
PTCD3-216ENST00000487043 NOC4LQ9BVI4 516 aaKnown RBP6.05□□□□□ -1.44
PTCD3-216ENST00000487043 UNC13AQ9UPW8 1703 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 MINDY4BA8MYZ0 360 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 GBP2P32456 591 aaPredicted RBP6.04□□□□□ -1.44
PTCD3-216ENST00000487043 PRPF40BQ6NWY9 871 aaKnown RBP6.04□□□□□ -1.44
PTCD3-216ENST00000487043 FAM35AQ86V20 835 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 FMR1NBQ8N0W7 255 aaPredicted RBP6.04□□□□□ -1.44
PTCD3-216ENST00000487043 GPRASP2Q96D09 838 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 NSUN5Q96P11 429 aaKnown RBP6.04□□□□□ -1.44
PTCD3-216ENST00000487043 TCF12Q99081 682 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.04□□□□□ -1.449e-13■■□□□ 13.9
PTCD3-216ENST00000487043 SPON2Q9BUD6 331 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 RSRP1Q9BUV0 290 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 LNPKQ9C0E8 428 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 ABCB6Q9NP58 842 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 TLR7Q9NYK1 1049 aaKnown RBP6.04□□□□□ -1.44
PTCD3-216ENST00000487043 NAGPAQ9UK23 515 aa6.04□□□□□ -1.44
PTCD3-216ENST00000487043 XRCC5P13010 732 aaKnown RBP6.03□□□□□ -1.44
PTCD3-216ENST00000487043 CPB1P15086 417 aa6.03□□□□□ -1.44
PTCD3-216ENST00000487043 GJA8P48165 433 aa6.03□□□□□ -1.44
PTCD3-216ENST00000487043 PLAURQ03405 335 aa6.03□□□□□ -1.44
PTCD3-216ENST00000487043 PCSK7Q16549 785 aa6.03□□□□□ -1.44
PTCD3-216ENST00000487043 TPTE2Q6XPS3 522 aa6.03□□□□□ -1.44
PTCD3-216ENST00000487043 DHX32Q7L7V1 743 aaKnown RBP6.03□□□□□ -1.44
PTCD3-216ENST00000487043 MCF2L2Q86YR7 1114 aa6.03□□□□□ -1.44
PTCD3-216ENST00000487043 ARMC5Q96C12 935 aa6.03□□□□□ -1.44
PTCD3-216ENST00000487043 HYAL3O43820 417 aaPredicted RBP6.02□□□□□ -1.45
PTCD3-216ENST00000487043 STK10O94804 968 aaKnown RBP6.02□□□□□ -1.45
PTCD3-216ENST00000487043 KIF4AO95239 1232 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 MAP3K6O95382 1288 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 ATF4P18848 351 aaPredicted RBP6.02□□□□□ -1.45
PTCD3-216ENST00000487043 SOX18P35713 384 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 PWP1Q13610 501 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 MSL1Q68DK7 614 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 ILDR2Q71H61 639 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 CCNJLQ8IV13 435 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 KIAA0825Q8IV33 1275 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 SPACA7Q96KW9 195 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 SPATA32Q96LK8 384 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 ADAMTS1Q9UHI8 967 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 PPM1HQ9ULR3 514 aa6.02□□□□□ -1.45
PTCD3-216ENST00000487043 METTL12A8MUP2 240 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 FGRP09769 529 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 EIF4A3P38919 411 aaKnown RBP6.01□□□□□ -1.45
PTCD3-216ENST00000487043 GRIA4P48058 902 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 MLLT1Q03111 559 aaPredicted RBP6.01□□□□□ -1.45
PTCD3-216ENST00000487043 SPRED3Q2MJR0 410 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 CCDC144BQ3MJ40 725 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 GIMAP6Q6P9H5 292 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 ELMSAN1Q6PJG2 1045 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 HFE2Q6ZVN8 426 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 SV2BQ7L1I2 683 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 CEP120Q8N960 986 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 ASAP3Q8TDY4 903 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 TMEM74Q96NL1 305 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 HHIPQ96QV1 700 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 DZANK1Q9NVP4 752 aa6.01□□□□□ -1.45
PTCD3-216ENST00000487043 J3QW42 95 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 CELA3AP09093 270 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 RLBP1P12271 317 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 IREB2P48200 963 aaKnown RBP6□□□□□ -1.45
PTCD3-216ENST00000487043 FAM160A1Q05DH4 1040 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 RBL2Q08999 1139 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 WFDC8Q8IUA0 241 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 WFDC12Q8WWY7 111 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 HIRIP3Q9BW71 556 aaPredicted RBP6□□□□□ -1.45
PTCD3-216ENST00000487043 CEP44Q9C0F1 390 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 ZFYVE1Q9HBF4 777 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 TLR6Q9Y2C9 796 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 BICRAQ9NZM4 1560 aa6□□□□□ -1.45
PTCD3-216ENST00000487043 A0A096LPE4 126 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 LOC102724428A0A0B4J2F2 783 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 A0A1W2PPZ6 126 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 SSBP05455 408 aaKnown RBP eCLIP5.99□□□□□ -1.458e-30■■■□□ 15.2
PTCD3-216ENST00000487043 LIG3P49916 1009 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 NRLP54845 237 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 SIK1P57059 783 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 ATP11AP98196 1134 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 FBXO11Q86XK2 927 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 DTWD1Q8N5C7 304 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 RASGRP4Q8TDF6 673 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 ANKRD24Q8TF21 1146 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 ZNF296Q8WUU4 475 aaPredicted RBP5.99□□□□□ -1.45
PTCD3-216ENST00000487043 NXPE3Q969Y0 559 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 EAF1Q96JC9 268 aaPredicted RBP5.99□□□□□ -1.45
PTCD3-216ENST00000487043 LPIN3Q9BQK8 851 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 SSBP4Q9BWG4 385 aaPredicted RBP5.99□□□□□ -1.45
PTCD3-216ENST00000487043 RASSF4Q9H2L5 321 aa5.99□□□□□ -1.45
PTCD3-216ENST00000487043 ZBTB42B2RXF5 422 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 NFKBIEO00221 500 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 PDE2AO00408 941 aaPredicted RBP5.98□□□□□ -1.45
PTCD3-216ENST00000487043 PF4P02776 101 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 HOXD8P13378 290 aaPredicted RBP5.98□□□□□ -1.45
PTCD3-216ENST00000487043 ITPKAP23677 461 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 NOS3P29474 1203 aa5.98□□□□□ -1.45
PTCD3-216ENST00000487043 NASPP49321 788 aaPredicted RBP5.98□□□□□ -1.45
PTCD3-216ENST00000487043 PERM1Q5SV97 790 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms