RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CRKP46108 304 aa18.14■□□□□ 0.49
USP4-212ENST00000486549 MAP2K1Q02750 393 aaPredicted RBP18.14■□□□□ 0.49
USP4-212ENST00000486549 TTC39AQ5SRH9 613 aa18.14■□□□□ 0.49
USP4-212ENST00000486549 RHPN1Q8TCX5 695 aa18.14■□□□□ 0.49
USP4-212ENST00000486549 EAF2Q96CJ1 260 aaPredicted RBP18.14■□□□□ 0.49
USP4-212ENST00000486549 ZBED3Q96IU2 234 aaPredicted RBP18.14■□□□□ 0.49
USP4-212ENST00000486549 TLR7Q9NYK1 1049 aaKnown RBP18.14■□□□□ 0.49
USP4-212ENST00000486549 TLL2Q9Y6L7 1015 aa18.14■□□□□ 0.49
USP4-212ENST00000486549 CLRN2A0PK11 232 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 SPDYE2BA6NHP3 402 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 SPDYE6P0CI01 402 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 CCDC158Q5M9N0 1113 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 CST9Q5W186 159 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 PI16Q6UXB8 463 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 PAXIP1Q6ZW49 1069 aaPredicted RBP18.13■□□□□ 0.49
USP4-212ENST00000486549 AACSQ86V21 672 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 MTMR14Q8NCE2 650 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 PRMT6Q96LA8 375 aaPredicted RBP18.13■□□□□ 0.49
USP4-212ENST00000486549 DBNLQ9UJU6 430 aaKnown RBP18.13■□□□□ 0.49
USP4-212ENST00000486549 SERPINA10Q9UK55 444 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 AOX1Q06278 1338 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 PITPNM2Q9BZ72 1349 aa18.13■□□□□ 0.49
USP4-212ENST00000486549 WDR33Q9C0J8 1336 aaKnown RBP18.13■□□□□ 0.49
USP4-212ENST00000486549 MYO1BO43795 1136 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 ARID4AP29374 1257 aaPredicted RBP18.12■□□□□ 0.49
USP4-212ENST00000486549 PRDX5P30044 214 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 TEKT1Q969V4 418 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 KIF1BPQ96EK5 621 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 BEGAINQ9BUH8 593 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 VEZTQ9HBM0 779 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 HMG20BQ9P0W2 317 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 SUGT1Q9Y2Z0 365 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 PCDHB15Q9Y5E8 787 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 MAST3O60307 1309 aa18.12■□□□□ 0.49
USP4-212ENST00000486549 RAB11FIP3O75154 756 aa18.11■□□□□ 0.49
USP4-212ENST00000486549 LDHBP07195 334 aaKnown RBP18.11■□□□□ 0.49
USP4-212ENST00000486549 UQCRFS1P1P0C7P4 283 aa18.11■□□□□ 0.49
USP4-212ENST00000486549 MCAMP43121 646 aa18.11■□□□□ 0.49
USP4-212ENST00000486549 APOBEC3FQ8IUX4 373 aaKnown RBP18.11■□□□□ 0.49
USP4-212ENST00000486549 SPATA5Q8NB90 893 aa18.11■□□□□ 0.49
USP4-212ENST00000486549 CDCA5Q96FF9 252 aa18.11■□□□□ 0.49
USP4-212ENST00000486549 ABCF2Q9UG63 623 aa18.11■□□□□ 0.49
USP4-212ENST00000486549 PDS5AQ29RF7 1337 aaKnown RBP18.11■□□□□ 0.49
USP4-212ENST00000486549 SALL1Q9NSC2 1324 aa18.11■□□□□ 0.49
USP4-212ENST00000486549 AKAP11Q9UKA4 1901 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 MAP2K2P36507 400 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 PRAMEF18Q5VWM3 479 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 SAPCD2Q86UD0 394 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 CLASRPQ8N2M8 674 aaKnown RBP18.1■□□□□ 0.49
USP4-212ENST00000486549 ZGPATQ8N5A5 531 aaKnown RBP18.1■□□□□ 0.49
USP4-212ENST00000486549 CAPNS2Q96L46 248 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 SNRKQ9NRH2 765 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 PCNTO95613 3336 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 MYH2Q9UKX2 1941 aa18.1■□□□□ 0.49
USP4-212ENST00000486549 ZBTB22O15209 634 aa18.09■□□□□ 0.49
USP4-212ENST00000486549 CTCFP49711 727 aaPredicted RBP18.09■□□□□ 0.49
USP4-212ENST00000486549 HDLBPQ00341 1268 aaKnown RBP18.09■□□□□ 0.49
USP4-212ENST00000486549 DIXDC1Q155Q3 683 aa18.09■□□□□ 0.49
USP4-212ENST00000486549 C2orf69Q8N8R5 385 aa18.09■□□□□ 0.49
USP4-212ENST00000486549 TDRD3Q9H7E2 651 aaKnown RBP18.09■□□□□ 0.49
USP4-212ENST00000486549 WBP1LQ9NX94 342 aa18.09■□□□□ 0.49
USP4-212ENST00000486549 TBC1D9Q6ZT07 1266 aa18.08■□□□□ 0.48
USP4-212ENST00000486549 DZIP1Q86YF9 867 aaKnown RBP18.08■□□□□ 0.48
USP4-212ENST00000486549 ZNF70Q9UC06 446 aaPredicted RBP18.08■□□□□ 0.48
USP4-212ENST00000486549 SMARCA5O60264 1052 aaPredicted RBP18.07■□□□□ 0.48
USP4-212ENST00000486549 IFIT2P09913 472 aaKnown RBP18.07■□□□□ 0.48
USP4-212ENST00000486549 SPDYE2Q495Y8 402 aa18.07■□□□□ 0.48
USP4-212ENST00000486549 COL13A1Q5TAT6 717 aaPredicted RBP18.07■□□□□ 0.48
USP4-212ENST00000486549 SPTY2D1Q68D10 685 aaPredicted RBP18.07■□□□□ 0.48
USP4-212ENST00000486549 ERICH6Q7L0X2 663 aa18.07■□□□□ 0.48
USP4-212ENST00000486549 EXOC6Q8TAG9 804 aa18.07■□□□□ 0.48
USP4-212ENST00000486549 ZDHHC15Q96MV8 337 aa18.07■□□□□ 0.48
USP4-212ENST00000486549 LRRCC1Q9C099 1032 aa18.07■□□□□ 0.48
USP4-212ENST00000486549 PRDM10Q9NQV6 1147 aa18.07■□□□□ 0.48
USP4-212ENST00000486549 MYO5AQ9Y4I1 1855 aaKnown RBP18.07■□□□□ 0.48
USP4-212ENST00000486549 IRX6P78412 446 aaPredicted RBP18.06■□□□□ 0.48
USP4-212ENST00000486549 HHIPL2Q6UWX4 724 aa18.06■□□□□ 0.48
USP4-212ENST00000486549 DCTPP1Q9H773 170 aa18.06■□□□□ 0.48
USP4-212ENST00000486549 GBA2Q9HCG7 927 aaPredicted RBP18.06■□□□□ 0.48
USP4-212ENST00000486549 RAI14Q9P0K7 980 aa18.06■□□□□ 0.48
USP4-212ENST00000486549 DAGLAQ9Y4D2 1042 aa18.06■□□□□ 0.48
USP4-212ENST00000486549 MAST2Q6P0Q8 1798 aa18.06■□□□□ 0.48
USP4-212ENST00000486549 TCP10L2B9ZVM9 353 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 CA12O43570 354 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 ZAP70P43403 619 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 CACNB3P54284 484 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 CYP4F22Q6NT55 531 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 APOBEC3HQ6NTF7 200 aaKnown RBP18.05■□□□□ 0.48
USP4-212ENST00000486549 TNS4Q8IZW8 715 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 ZNF512BQ96KM6 892 aaPredicted RBP18.05■□□□□ 0.48
USP4-212ENST00000486549 MRIQ9BWK5 157 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 DEFB129Q9H1M3 183 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 LRP2BPQ9P2M1 347 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 NDUFB9Q9Y6M9 179 aa18.05■□□□□ 0.48
USP4-212ENST00000486549 HUNKP57058 714 aa18.04■□□□□ 0.48
USP4-212ENST00000486549 FKBP1BP68106 108 aa18.04■□□□□ 0.48
USP4-212ENST00000486549 MECOMQ03112 1051 aa18.04■□□□□ 0.48
USP4-212ENST00000486549 NOGQ13253 232 aa18.04■□□□□ 0.48
USP4-212ENST00000486549 GRM1Q13255 1194 aa18.04■□□□□ 0.48
USP4-212ENST00000486549 CCDC102AQ96A19 550 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms