RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TMC1Q8TDI8 760 aa6.33□□□□□ -1.4
VPS50-216ENST00000484954 BIN2Q9UBW5 565 aaPredicted RBP6.33□□□□□ -1.4
VPS50-216ENST00000484954 EIF1AYO14602 144 aaKnown RBP6.32□□□□□ -1.4
VPS50-216ENST00000484954 CPNE3O75131 537 aaKnown RBP6.32□□□□□ -1.4
VPS50-216ENST00000484954 DLGAP3O95886 979 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 ESRRAP11474 423 aaPredicted RBP6.32□□□□□ -1.4
VPS50-216ENST00000484954 C19orf57Q0VDD7 668 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 PDE3BQ13370 1112 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 UVSSAQ2YD98 709 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 BEND4Q6ZU67 534 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 TMC7Q7Z402 723 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 CLEC10AQ8IUN9 316 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 WNT8BQ93098 351 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 CITED4Q96RK1 184 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 RBCK1Q9BYM8 510 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 LIN7BQ9HAP6 207 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 OSGEPQ9NPF4 335 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 ANGEL1Q9UNK9 670 aaKnown RBP6.32□□□□□ -1.4
VPS50-216ENST00000484954 IVNS1ABPQ9Y6Y0 642 aa6.32□□□□□ -1.4
VPS50-216ENST00000484954 A0A096LPE4 126 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 A0A1W2PPZ6 126 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 SART1O43290 800 aaKnown RBP6.31□□□□□ -1.4
VPS50-216ENST00000484954 BMP3P12645 472 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 ZNF423Q2M1K9 1284 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 FAM20CQ8IXL6 584 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 POU5F2Q8N7G0 328 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 CCDC74AQ96AQ1 378 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 MFSD14AQ96MC6 490 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 FAM83CQ9BQN1 747 aa6.31□□□□□ -1.4
VPS50-216ENST00000484954 PREPP48147 710 aa6.3□□□□□ -1.4
VPS50-216ENST00000484954 KIAA0319Q5VV43 1072 aa6.3□□□□□ -1.4
VPS50-216ENST00000484954 PI16Q6UXB8 463 aa6.3□□□□□ -1.4
VPS50-216ENST00000484954 EPS8L3Q8TE67 593 aaKnown RBP6.3□□□□□ -1.4
VPS50-216ENST00000484954 ASIC4Q96FT7 647 aa6.3□□□□□ -1.4
VPS50-216ENST00000484954 CSRNP1Q96S65 589 aa6.3□□□□□ -1.4
VPS50-216ENST00000484954 USP26Q9BXU7 913 aa6.3□□□□□ -1.4
VPS50-216ENST00000484954 NRSN2Q9GZP1 204 aa6.3□□□□□ -1.4
VPS50-216ENST00000484954 LOC100289279A0A1B0GTE1 492 aa6.29□□□□□ -1.4
VPS50-216ENST00000484954 CTSBP07858 339 aa6.29□□□□□ -1.4
VPS50-216ENST00000484954 PCDH1Q08174 1060 aa6.29□□□□□ -1.4
VPS50-216ENST00000484954 RUSC1Q9BVN2 902 aa6.29□□□□□ -1.4
VPS50-216ENST00000484954 EHD4Q9H223 541 aa6.29□□□□□ -1.4
VPS50-216ENST00000484954 PIM2Q9P1W9 311 aa6.29□□□□□ -1.4
VPS50-216ENST00000484954 MAPK1P28482 360 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 ARL4DP49703 201 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 GSTM4Q03013 218 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 DSC3Q14574 896 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 TP53INP2Q8IXH6 220 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 GLIS3Q8NEA6 775 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 ALKBH8Q96BT7 664 aaKnown RBP6.28□□□□□ -1.4
VPS50-216ENST00000484954 DMRTB1Q96MA1 342 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 CLEC4MQ9H2X3 399 aaPredicted RBP6.28□□□□□ -1.4
VPS50-216ENST00000484954 ZNF576Q9H609 170 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 ABCB6Q9NP58 842 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 DCTN4Q9UJW0 460 aa6.28□□□□□ -1.4
VPS50-216ENST00000484954 ECEL1O95672 775 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 NEFLP07196 543 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 GRM2Q14416 872 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 FBXL6Q8N531 539 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 SETDB2Q96T68 719 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 RNF208Q9H0X6 261 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 DNAJC25Q9H1X3 360 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 SOX17Q9H6I2 414 aaPredicted RBP6.27□□□□□ -1.41
VPS50-216ENST00000484954 ATG3Q9NT62 314 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 CCDC39Q9UFE4 941 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 LEMD3Q9Y2U8 911 aa6.27□□□□□ -1.41
VPS50-216ENST00000484954 GADD45BO75293 160 aaPredicted RBP6.26□□□□□ -1.41
VPS50-216ENST00000484954 ITPKAP23677 461 aa6.26□□□□□ -1.41
VPS50-216ENST00000484954 ZNF124Q15973 351 aa6.26□□□□□ -1.41
VPS50-216ENST00000484954 ZNF648Q5T619 568 aaPredicted RBP6.26□□□□□ -1.41
VPS50-216ENST00000484954 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.26□□□□□ -1.41
VPS50-216ENST00000484954 CBLL1Q75N03 491 aa6.26□□□□□ -1.41
VPS50-216ENST00000484954 TRIM56Q9BRZ2 755 aaKnown RBP6.26□□□□□ -1.41
VPS50-216ENST00000484954 TRAIPQ9BWF2 469 aa6.26□□□□□ -1.41
VPS50-216ENST00000484954 TMPRSS13Q9BYE2 586 aa6.26□□□□□ -1.41
VPS50-216ENST00000484954 TREHO43280 583 aa6.25□□□□□ -1.41
VPS50-216ENST00000484954 F13BP05160 661 aa6.25□□□□□ -1.41
VPS50-216ENST00000484954 DRD2P14416 443 aa6.25□□□□□ -1.41
VPS50-216ENST00000484954 FAAP100Q0VG06 881 aa6.25□□□□□ -1.41
VPS50-216ENST00000484954 COL19A1Q14993 1142 aa6.25□□□□□ -1.41
VPS50-216ENST00000484954 ANKRD34AQ69YU3 496 aa6.25□□□□□ -1.41
VPS50-216ENST00000484954 PRPF40BQ6NWY9 871 aaKnown RBP6.25□□□□□ -1.41
VPS50-216ENST00000484954 NFXL1Q6ZNB6 911 aa6.25□□□□□ -1.41
VPS50-216ENST00000484954 PNMA6FA0A0J9YX94 578 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 TMEM238LA0A1B0GVL6 79 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 MEGF11A6BM72 1044 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 KRTAP9-7A8MTY7 169 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 TIAF1O95411 115 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 B3GALT4O96024 378 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 MAOBP27338 520 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 RXRBP28702 533 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 ZNF157P51786 506 aaPredicted RBP6.24□□□□□ -1.41
VPS50-216ENST00000484954 KCNA1Q09470 495 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 MSMPQ1L6U9 139 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 FDX2Q6P4F2 183 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 SHISA5Q8N114 240 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 OSBPL1AQ9BXW6 950 aa6.24□□□□□ -1.41
VPS50-216ENST00000484954 GAS2O43903 313 aaKnown RBP6.23□□□□□ -1.41
VPS50-216ENST00000484954 ITGB5P18084 799 aa6.23□□□□□ -1.41
VPS50-216ENST00000484954 ENOX2Q16206 610 aaKnown RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms