RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 SRGAP3O43295 1099 aa13.04□□□□□ -0.32
CPSF4-212ENST00000482251 CIAO1O76071 339 aa13.04□□□□□ -0.32
CPSF4-212ENST00000482251 CACNB3P54284 484 aa13.04□□□□□ -0.32
CPSF4-212ENST00000482251 RASA3Q14644 834 aa13.04□□□□□ -0.32
CPSF4-212ENST00000482251 SPDYE2Q495Y8 402 aa13.04□□□□□ -0.32
CPSF4-212ENST00000482251 NBPF12Q5TAG4 269 aaPredicted RBP13.04□□□□□ -0.32
CPSF4-212ENST00000482251 DZIP1LQ8IYY4 767 aaKnown RBP13.04□□□□□ -0.32
CPSF4-212ENST00000482251 RNF186Q9NXI6 227 aa13.04□□□□□ -0.32
CPSF4-212ENST00000482251 IPO8O15397 1037 aaKnown RBP13.03□□□□□ -0.32
CPSF4-212ENST00000482251 GNAI3P08754 354 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 ADORA1P30542 326 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 TMEM57Q8N5G2 664 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 TBC1D22AQ8WUA7 517 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 ABHD8Q96I13 439 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 CLMNQ96JQ2 1002 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 CEP126Q9P2H0 1117 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 PPP2R3BQ9Y5P8 575 aa13.03□□□□□ -0.32
CPSF4-212ENST00000482251 IL15P40933 162 aaPredicted RBP13.02□□□□□ -0.33
CPSF4-212ENST00000482251 PHKA1P46020 1223 aa13.02□□□□□ -0.33
CPSF4-212ENST00000482251 TNFAIP1Q13829 316 aa13.02□□□□□ -0.33
CPSF4-212ENST00000482251 ZKSCAN2Q63HK3 967 aa13.02□□□□□ -0.33
CPSF4-212ENST00000482251 TEKT1Q969V4 418 aa13.02□□□□□ -0.33
CPSF4-212ENST00000482251 TMEM39BQ9GZU3 492 aa13.02□□□□□ -0.33
CPSF4-212ENST00000482251 SAGE1Q9NXZ1 904 aa13.02□□□□□ -0.33
CPSF4-212ENST00000482251 HDAC5Q9UQL6 1122 aa13.02□□□□□ -0.33
CPSF4-212ENST00000482251 C1orf115Q9H7X2 142 aa13.01□□□□□ -0.33
CPSF4-212ENST00000482251 COPRSQ9NQ92 184 aa13.01□□□□□ -0.33
CPSF4-212ENST00000482251 FBXO3Q9UK99 471 aa13.01□□□□□ -0.33
CPSF4-212ENST00000482251 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.01□□□□□ -0.33
CPSF4-212ENST00000482251 ZBED9Q6R2W3 1325 aa13.01□□□□□ -0.33
CPSF4-212ENST00000482251 MAST3O60307 1309 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 PNMA6EA0A0J9YXQ4 647 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 PPP1R12BO60237 982 aaPredicted RBP13□□□□□ -0.33
CPSF4-212ENST00000482251 GNAI2P04899 355 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 PRDX5P30044 214 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 TFCP2Q12800 502 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 DGKZQ13574 1117 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 DIXDC1Q155Q3 683 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 SUPT20HL1Q3ZLR7 823 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 LDLRAD1Q5T700 205 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 FTSJ3Q8IY81 847 aaKnown RBP13□□□□□ -0.33
CPSF4-212ENST00000482251 MCOLN1Q9GZU1 580 aa13□□□□□ -0.33
CPSF4-212ENST00000482251 TBC1D8O95759 1140 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 IREB2P48200 963 aaKnown RBP12.99□□□□□ -0.33
CPSF4-212ENST00000482251 TIMM10P62072 90 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 MTX1Q13505 466 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 SPRYD7Q5W111 196 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 CCDC102BQ68D86 513 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 ITPRIPQ8IWB1 547 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 WDR66Q8TBY9 1149 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 SLC10A4Q96EP9 437 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 ZDHHC15Q96MV8 337 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 TEPSINQ96N21 525 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 TMOD2Q9NZR1 351 aa12.99□□□□□ -0.33
CPSF4-212ENST00000482251 A0A1B0GUL7 405 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 CCDC85CA6NKD9 419 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 USP2O75604 605 aaPredicted RBP12.98□□□□□ -0.33
CPSF4-212ENST00000482251 RLBP1P12271 317 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 TNNI2P48788 182 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 HDLBPQ00341 1268 aaKnown RBP12.98□□□□□ -0.33
CPSF4-212ENST00000482251 SREBF2Q12772 1141 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 MAP3K11Q16584 847 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 APOBEC3HQ6NTF7 200 aaKnown RBP12.98□□□□□ -0.33
CPSF4-212ENST00000482251 WNK4Q96J92 1243 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 ELP3Q9H9T3 547 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 GNL3LQ9NVN8 582 aaKnown RBP12.98□□□□□ -0.33
CPSF4-212ENST00000482251 DAGLAQ9Y4D2 1042 aa12.98□□□□□ -0.33
CPSF4-212ENST00000482251 LDHBP07195 334 aaKnown RBP12.97□□□□□ -0.33
CPSF4-212ENST00000482251 GJA5P36382 358 aa12.97□□□□□ -0.33
CPSF4-212ENST00000482251 RASGRF1Q13972 1273 aa12.97□□□□□ -0.33
CPSF4-212ENST00000482251 REM2Q8IYK8 340 aaPredicted RBP12.97□□□□□ -0.33
CPSF4-212ENST00000482251 CNKSR2Q8WXI2 1034 aa12.97□□□□□ -0.33
CPSF4-212ENST00000482251 XAGE2Q96GT9 111 aa12.97□□□□□ -0.33
CPSF4-212ENST00000482251 NEUROD6Q96NK8 337 aa12.97□□□□□ -0.33
CPSF4-212ENST00000482251 DENND2AQ9ULE3 1009 aa12.97□□□□□ -0.33
CPSF4-212ENST00000482251 SUGT1Q9Y2Z0 365 aa12.97□□□□□ -0.33
CPSF4-212ENST00000482251 TCP10Q12799 353 aa12.96□□□□□ -0.33
CPSF4-212ENST00000482251 HHIPL2Q6UWX4 724 aa12.96□□□□□ -0.33
CPSF4-212ENST00000482251 ANKRD13AQ8IZ07 590 aa12.96□□□□□ -0.33
CPSF4-212ENST00000482251 LAMB1P07942 1786 aa12.96□□□□□ -0.34
CPSF4-212ENST00000482251 TM4SF4P48230 202 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 NFIAQ12857 509 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 VGLL4Q14135 290 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 CDC42EP5Q6NZY7 148 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 PI16Q6UXB8 463 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 DZIP1Q86YF9 867 aaKnown RBP12.95□□□□□ -0.34
CPSF4-212ENST00000482251 ZNF296Q8WUU4 475 aaPredicted RBP12.95□□□□□ -0.34
CPSF4-212ENST00000482251 OPTNQ96CV9 577 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 R3HDMLQ9H3Y0 253 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 ABCF2Q9UG63 623 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 AKAP2Q9Y2D5 859 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 MYH2Q9UKX2 1941 aa12.95□□□□□ -0.34
CPSF4-212ENST00000482251 SALL1Q9NSC2 1324 aa12.94□□□□□ -0.34
CPSF4-212ENST00000482251 MANSC4A6NHS7 340 aaPredicted RBP12.94□□□□□ -0.34
CPSF4-212ENST00000482251 IGF2BP3O00425 579 aaKnown RBP eCLIP12.94□□□□□ -0.34
CPSF4-212ENST00000482251 SEMA3EO15041 775 aa12.94□□□□□ -0.34
CPSF4-212ENST00000482251 ZBTB48P10074 688 aaPredicted RBP12.94□□□□□ -0.34
CPSF4-212ENST00000482251 G3BP1Q13283 466 aaKnown RBP eCLIP12.94□□□□□ -0.34
CPSF4-212ENST00000482251 OS9Q13438 667 aaPredicted RBP12.94□□□□□ -0.34
CPSF4-212ENST00000482251 MVPQ14764 893 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms