RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 LY75O60449 1722 aa7.98□□□□□ -1.13
SF3B1-209ENST00000479532 PALLDQ8WX93 1383 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 MAGEB6P1A0A0J9YX57 407 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 SKIP12755 728 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 GNAI1P63096 354 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 HNRNPUQ00839 825 aaKnown RBP eCLIP7.97□□□□□ -1.13
SF3B1-209ENST00000479532 RELBQ01201 579 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 SLC27A3Q5K4L6 730 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 SH3BP5LQ7L8J4 393 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 ZBTB33Q86T24 672 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 WDR63Q8IWG1 891 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 ZNF592Q92610 1267 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 AGBL1Q96MI9 1066 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 TSPYL4Q9UJ04 414 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 IL16Q14005 1332 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 KDM3BQ7LBC6 1761 aa7.97□□□□□ -1.13
SF3B1-209ENST00000479532 SENP3-EIF4A1A0A087X0R7 540 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 USP17L3A6NCW0 530 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 USP17L4A6NCW7 530 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 USP17L5A8MUK1 530 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 PDE4CQ08493 712 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 SLFNL1Q499Z3 407 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 ZNF790Q6PG37 636 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 USP17L2Q6R6M4 530 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 USP17L1Q7RTZ2 530 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 FMNL2Q96PY5 1086 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 THUMPD2Q9BTF0 503 aaKnown RBP7.96□□□□□ -1.14
SF3B1-209ENST00000479532 ATG3Q9NT62 314 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 IFT57Q9NWB7 429 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 CEP126Q9P2H0 1117 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 ASAP1Q9ULH1 1129 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 UBR2Q8IWV8 1755 aa7.96□□□□□ -1.14
SF3B1-209ENST00000479532 ZNF831Q5JPB2 1677 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 RREB1Q92766 1687 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 LOC102724428A0A0B4J2F2 783 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 PTCD1O75127 700 aaKnown RBP7.95□□□□□ -1.14
SF3B1-209ENST00000479532 ATG7O95352 703 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 SIK1P57059 783 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 MCCD1P59942 119 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-209ENST00000479532 SLC39A6Q13433 755 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 ALYREFQ86V81 257 aaKnown RBP7.95□□□□□ -1.14
SF3B1-209ENST00000479532 DEPDC4Q8N2C3 294 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 C1QTNF2Q9BXJ5 285 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 TEX13AQ9BXU3 409 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-209ENST00000479532 CHMP4AQ9BY43 222 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 MYH16Q9H6N6 1097 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 CCNL1Q9UK58 526 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-209ENST00000479532 USTQ9Y2C2 406 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 C5P01031 1676 aa7.95□□□□□ -1.14
SF3B1-209ENST00000479532 EZH2Q15910 746 aaKnown RBP7.94□□□□□ -1.14
SF3B1-209ENST00000479532 TXNRD1Q16881 649 aa7.94□□□□□ -1.14
SF3B1-209ENST00000479532 PTF1AQ7RTS3 328 aa7.94□□□□□ -1.14
SF3B1-209ENST00000479532 DEFB132Q7Z7B7 95 aa7.94□□□□□ -1.14
SF3B1-209ENST00000479532 RNF135Q8IUD6 432 aa7.94□□□□□ -1.14
SF3B1-209ENST00000479532 TRMT44Q8IYL2 757 aaKnown RBP7.94□□□□□ -1.14
SF3B1-209ENST00000479532 RNF217Q8TC41 542 aa7.94□□□□□ -1.14
SF3B1-209ENST00000479532 ACDQ96AP0 544 aa7.94□□□□□ -1.14
SF3B1-209ENST00000479532 ZNF395Q9H8N7 513 aaPredicted RBP7.94□□□□□ -1.14
SF3B1-209ENST00000479532 VRTNQ9H8Y1 702 aa7.94□□□□□ -1.14
SF3B1-209ENST00000479532 CUEDC1Q9NWM3 386 aaPredicted RBP7.94□□□□□ -1.14
SF3B1-209ENST00000479532 KCPQ6ZWJ8 1503 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 CICQ96RK0 1608 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-209ENST00000479532 NUP188Q5SRE5 1749 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 LAMB4A4D0S4 1761 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 CARNS1A5YM72 827 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 E9PSI1 815 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 GPR25O00155 361 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 CHL1O00533 1208 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 STARD3NLO95772 234 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 SNRPA1P09661 255 aaKnown RBP7.93□□□□□ -1.14
SF3B1-209ENST00000479532 ZMYM1Q5SVZ6 1142 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 NPM2Q86SE8 214 aaKnown RBP7.93□□□□□ -1.14
SF3B1-209ENST00000479532 DZIP3Q86Y13 1208 aaKnown RBP7.93□□□□□ -1.14
SF3B1-209ENST00000479532 PLEKHM2Q8IWE5 1019 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 CAMKK2Q96RR4 588 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 MIS18AQ9NYP9 233 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 SUPT16HQ9Y5B9 1047 aaKnown RBP7.93□□□□□ -1.14
SF3B1-209ENST00000479532 TAF1LQ8IZX4 1826 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 ZBED9Q6R2W3 1325 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 HEG1Q9ULI3 1381 aa7.93□□□□□ -1.14
SF3B1-209ENST00000479532 TJP1Q07157 1748 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 EP400Q96L91 3159 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 PHTF2Q8N3S3 785 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 PLPP7Q8NBV4 271 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 LRRC4BQ9NT99 713 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 STK32BQ9NY57 414 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 MKL2Q9ULH7 1088 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 NSFL1CQ9UNZ2 370 aaKnown RBP7.92□□□□□ -1.14
SF3B1-209ENST00000479532 SOS1Q07889 1333 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-209ENST00000479532 C4BP0C0L5 1744 aa7.92□□□□□ -1.14
SF3B1-209ENST00000479532 COL5A3P25940 1745 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-209ENST00000479532 HOXB7P09629 217 aa7.91□□□□□ -1.14
SF3B1-209ENST00000479532 ZNF853P0CG23 659 aa7.91□□□□□ -1.14
SF3B1-209ENST00000479532 EIF4A1P60842 406 aaKnown RBP7.91□□□□□ -1.14
SF3B1-209ENST00000479532 DHX9Q08211 1270 aaKnown RBP7.91□□□□□ -1.14
SF3B1-209ENST00000479532 NCOA4Q13772 614 aa7.91□□□□□ -1.14
SF3B1-209ENST00000479532 ERFEQ4G0M1 354 aa7.91□□□□□ -1.14
SF3B1-209ENST00000479532 GMCL1Q96IK5 515 aa7.91□□□□□ -1.14
SF3B1-209ENST00000479532 ZNF496Q96IT1 587 aaPredicted RBP7.91□□□□□ -1.14
SF3B1-209ENST00000479532 KRTAP4-12Q9BQ66 201 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms