RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 PI4K2BQ8TCG2 481 aa18.67■□□□□ 0.58
SEC13-215ENST00000477547 TBC1D22AQ8WUA7 517 aa18.67■□□□□ 0.58
SEC13-215ENST00000477547 MXD3Q9BW11 206 aa18.67■□□□□ 0.58
SEC13-215ENST00000477547 BOLA2Q9H3K6 86 aa18.67■□□□□ 0.58
SEC13-215ENST00000477547 TAF1DQ9H5J8 278 aaPredicted RBP18.67■□□□□ 0.58
SEC13-215ENST00000477547 STAP2Q9UGK3 403 aa18.67■□□□□ 0.58
SEC13-215ENST00000477547 NDUFB9Q9Y6M9 179 aa18.67■□□□□ 0.58
SEC13-215ENST00000477547 ITGBL1O95965 494 aaPredicted RBP18.66■□□□□ 0.58
SEC13-215ENST00000477547 HSPA8P11142 646 aaKnown RBP18.66■□□□□ 0.58
SEC13-215ENST00000477547 RSBN1LQ6PCB5 846 aaPredicted RBP18.66■□□□□ 0.58
SEC13-215ENST00000477547 SKAP1Q86WV1 359 aa18.66■□□□□ 0.58
SEC13-215ENST00000477547 SALL1Q9NSC2 1324 aa18.66■□□□□ 0.58
SEC13-215ENST00000477547 VIL1P09327 827 aaKnown RBP18.65■□□□□ 0.58
SEC13-215ENST00000477547 FKBP1AP62942 108 aaKnown RBP18.65■□□□□ 0.58
SEC13-215ENST00000477547 EAPPQ56P03 285 aaPredicted RBP18.65■□□□□ 0.58
SEC13-215ENST00000477547 CERS5Q8N5B7 392 aa18.65■□□□□ 0.58
SEC13-215ENST00000477547 HAUS7Q99871 368 aa18.65■□□□□ 0.58
SEC13-215ENST00000477547 IQCA1LA6NCM1 817 aa18.64■□□□□ 0.57
SEC13-215ENST00000477547 GMPSP49915 693 aaPredicted RBP18.64■□□□□ 0.57
SEC13-215ENST00000477547 ZGPATQ8N5A5 531 aaKnown RBP18.64■□□□□ 0.57
SEC13-215ENST00000477547 OSBPL3Q9H4L5 887 aa18.64■□□□□ 0.57
SEC13-215ENST00000477547 ABCF2Q9UG63 623 aa18.64■□□□□ 0.57
SEC13-215ENST00000477547 ZBTB12Q9Y330 459 aaPredicted RBP18.64■□□□□ 0.57
SEC13-215ENST00000477547 GOLIM4O00461 696 aa18.63■□□□□ 0.57
SEC13-215ENST00000477547 CYP2E1P05181 493 aaPredicted RBP18.63■□□□□ 0.57
SEC13-215ENST00000477547 RPS12P25398 132 aaKnown RBP18.63■□□□□ 0.57
SEC13-215ENST00000477547 RGS3P49796 1198 aa18.63■□□□□ 0.57
SEC13-215ENST00000477547 AGBL3Q8NEM8 1001 aa18.63■□□□□ 0.57
SEC13-215ENST00000477547 EDC3Q96F86 508 aaKnown RBP18.63■□□□□ 0.57
SEC13-215ENST00000477547 PAG1Q9NWQ8 432 aa18.63■□□□□ 0.57
SEC13-215ENST00000477547 CLEC11AQ9Y240 323 aa18.63■□□□□ 0.57
SEC13-215ENST00000477547 CDK5RAP2Q96SN8 1893 aa18.63■□□□□ 0.57
SEC13-215ENST00000477547 F8W031 263 aaPredicted RBP18.62■□□□□ 0.57
SEC13-215ENST00000477547 PRDX5P30044 214 aa18.62■□□□□ 0.57
SEC13-215ENST00000477547 TBC1D9Q6ZT07 1266 aa18.62■□□□□ 0.57
SEC13-215ENST00000477547 KIAA0825Q8IV33 1275 aa18.62■□□□□ 0.57
SEC13-215ENST00000477547 L3MBTL3Q96JM7 780 aaPredicted RBP18.62■□□□□ 0.57
SEC13-215ENST00000477547 ANTXR1Q9H6X2 564 aa18.62■□□□□ 0.57
SEC13-215ENST00000477547 PIH1D3Q9NQM4 214 aaKnown RBP18.62■□□□□ 0.57
SEC13-215ENST00000477547 MAST3O60307 1309 aa18.61■□□□□ 0.57
SEC13-215ENST00000477547 MAP4K4O95819 1239 aaPredicted RBP18.61■□□□□ 0.57
SEC13-215ENST00000477547 LDHBP07195 334 aaKnown RBP18.61■□□□□ 0.57
SEC13-215ENST00000477547 TTF1Q15361 905 aaPredicted RBP18.61■□□□□ 0.57
SEC13-215ENST00000477547 GRIK5Q16478 980 aa18.61■□□□□ 0.57
SEC13-215ENST00000477547 DEFB115Q30KQ5 88 aa18.61■□□□□ 0.57
SEC13-215ENST00000477547 DZIP1Q86YF9 867 aaKnown RBP18.61■□□□□ 0.57
SEC13-215ENST00000477547 GMLQ99445 158 aa18.61■□□□□ 0.57
SEC13-215ENST00000477547 FOCADQ5VW36 1801 aa18.6■□□□□ 0.57
SEC13-215ENST00000477547 IDH1O75874 414 aaKnown RBP18.6■□□□□ 0.57
SEC13-215ENST00000477547 LMOD1P29536 600 aaPredicted RBP18.6■□□□□ 0.57
SEC13-215ENST00000477547 SCNN1DP51172 638 aa18.6■□□□□ 0.57
SEC13-215ENST00000477547 TTC22Q5TAA0 569 aa18.6■□□□□ 0.57
SEC13-215ENST00000477547 SPTY2D1Q68D10 685 aaPredicted RBP18.6■□□□□ 0.57
SEC13-215ENST00000477547 ERICH6Q7L0X2 663 aa18.6■□□□□ 0.57
SEC13-215ENST00000477547 RAI14Q9P0K7 980 aa18.6■□□□□ 0.57
SEC13-215ENST00000477547 LRP2BPQ9P2M1 347 aa18.6■□□□□ 0.57
SEC13-215ENST00000477547 TTF2Q9UNY4 1162 aaKnown RBP18.6■□□□□ 0.57
SEC13-215ENST00000477547 SUGT1Q9Y2Z0 365 aa18.6■□□□□ 0.57
SEC13-215ENST00000477547 RASSF10A6NK89 507 aa18.59■□□□□ 0.57
SEC13-215ENST00000477547 CCDC85CA6NKD9 419 aa18.59■□□□□ 0.57
SEC13-215ENST00000477547 MAP1SQ66K74 1059 aaPredicted RBP18.59■□□□□ 0.57
SEC13-215ENST00000477547 MICALL2Q8IY33 904 aa18.59■□□□□ 0.57
SEC13-215ENST00000477547 GPRC5DQ9NZD1 345 aa18.59■□□□□ 0.57
SEC13-215ENST00000477547 WDR33Q9C0J8 1336 aaKnown RBP18.58■□□□□ 0.57
SEC13-215ENST00000477547 SHTN1A0MZ66 631 aa18.58■□□□□ 0.57
SEC13-215ENST00000477547 USP17L8P0C7I0 530 aa18.58■□□□□ 0.57
SEC13-215ENST00000477547 EPHX2P34913 555 aa18.58■□□□□ 0.57
SEC13-215ENST00000477547 DPF2Q92785 391 aa18.58■□□□□ 0.57
SEC13-215ENST00000477547 HACL1Q9UJ83 578 aa18.58■□□□□ 0.57
SEC13-215ENST00000477547 HDAC9Q9UKV0 1011 aa18.58■□□□□ 0.57
SEC13-215ENST00000477547 TRIM6-TRIM34B2RNG4 842 aa18.57■□□□□ 0.56
SEC13-215ENST00000477547 GSPT1P15170 499 aaKnown RBP18.57■□□□□ 0.56
SEC13-215ENST00000477547 CNTROBQ8N137 903 aa18.57■□□□□ 0.56
SEC13-215ENST00000477547 OGFOD1Q8N543 542 aa18.57■□□□□ 0.56
SEC13-215ENST00000477547 FSD1Q9BTV5 496 aa18.57■□□□□ 0.56
SEC13-215ENST00000477547 NAV1Q8NEY1 1877 aa18.57■□□□□ 0.56
SEC13-215ENST00000477547 MAP2K1Q02750 393 aaPredicted RBP18.56■□□□□ 0.56
SEC13-215ENST00000477547 MLLT1Q03111 559 aaPredicted RBP18.56■□□□□ 0.56
SEC13-215ENST00000477547 MECOMQ03112 1051 aa18.56■□□□□ 0.56
SEC13-215ENST00000477547 MAP3K12Q12852 859 aa18.56■□□□□ 0.56
SEC13-215ENST00000477547 DIXDC1Q155Q3 683 aa18.56■□□□□ 0.56
SEC13-215ENST00000477547 KBTBD3Q8NAB2 608 aa18.56■□□□□ 0.56
SEC13-215ENST00000477547 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.56■□□□□ 0.564e-8■□□□□ 10.1
SEC13-215ENST00000477547 CNOT7Q9UIV1 285 aaKnown RBP18.56■□□□□ 0.56
SEC13-215ENST00000477547 ABT1Q9ULW3 272 aaKnown RBP18.56■□□□□ 0.56
SEC13-215ENST00000477547 RFX7Q2KHR2 1363 aa18.56■□□□□ 0.56
SEC13-215ENST00000477547 ZNF280AP59817 542 aaPredicted RBP18.55■□□□□ 0.56
SEC13-215ENST00000477547 TEKT1Q969V4 418 aa18.55■□□□□ 0.56
SEC13-215ENST00000477547 RILPL2Q969X0 211 aa18.55■□□□□ 0.56
SEC13-215ENST00000477547 EVI5LQ96CN4 794 aa18.55■□□□□ 0.56
SEC13-215ENST00000477547 MROH7-TTC4A0A0A0MT08 1334 aa18.55■□□□□ 0.56
SEC13-215ENST00000477547 POLR2AP24928 1970 aaKnown RBP18.54■□□□□ 0.56
SEC13-215ENST00000477547 H7C1D1 291 aa18.54■□□□□ 0.56
SEC13-215ENST00000477547 EPS15P42566 896 aa18.54■□□□□ 0.56
SEC13-215ENST00000477547 CRKP46108 304 aa18.54■□□□□ 0.56
SEC13-215ENST00000477547 FMR1Q06787 632 aaKnown RBP eCLIP18.54■□□□□ 0.56
SEC13-215ENST00000477547 KIF4BQ2VIQ3 1234 aa18.54■□□□□ 0.56
SEC13-215ENST00000477547 NAA16Q6N069 864 aaPredicted RBP18.54■□□□□ 0.56
SEC13-215ENST00000477547 MAGEB6Q8N7X4 407 aa18.54■□□□□ 0.56
SEC13-215ENST00000477547 NSUN4Q96CB9 384 aaKnown RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms