RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 OTOFQ9HC10 1997 aa15.4■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 MANSC4A6NHS7 340 aaPredicted RBP15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CT47B1P0C2W7 299 aaPredicted RBP15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 GJA5P36382 358 aa15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CRKP46108 304 aa15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 BCAMP50895 628 aa15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 METTL24Q5JXM2 366 aa15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 ATG9AQ7Z3C6 839 aa15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 VEZTQ9HBM0 779 aa15.39■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 TESPA1A2RU30 521 aaPredicted RBP15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 EYA2O00167 538 aa15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 ALDH1A1P00352 501 aa15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 RBM5P52756 815 aaKnown RBP eCLIP15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 TNFAIP1Q13829 316 aa15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 IFNL1Q8IU54 200 aa15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CDAN1Q8IWY9 1227 aa15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 TBC1D22AQ8WUA7 517 aa15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 IQSEC3Q9UPP2 1182 aaPredicted RBP15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 SUGT1Q9Y2Z0 365 aa15.38■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 IGF2BP3O00425 579 aaKnown RBP eCLIP15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 ZBTB22O15209 634 aa15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 IREB2P48200 963 aaKnown RBP15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CAVIN4Q5BKX8 364 aa15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 ANKRD13AQ8IZ07 590 aa15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 PIAS4Q8N2W9 510 aaPredicted RBP15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 FBXO3Q9UK99 471 aa15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 HPS5Q9UPZ3 1129 aa15.37■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 PUM3Q15397 648 aaKnown RBP15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 APOBEC3HQ6NTF7 200 aaKnown RBP15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 VPS37DQ86XT2 251 aa15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 MS4A4AQ96JQ5 239 aa15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 ZDHHC15Q96MV8 337 aa15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 PTPN18Q99952 460 aa15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 TMEM39BQ9GZU3 492 aa15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CENPFP49454 3210 aa15.36■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 MYH13Q9UKX3 1938 aa15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CCER2I3L3R5 266 aa15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 FKTNO75072 461 aa15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 FKBP1CQ5VVH2 108 aa15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 HHIPL2Q6UWX4 724 aa15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 LPIN2Q92539 896 aa15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 SMC4Q9NTJ3 1288 aa15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 NOB1Q9ULX3 412 aaKnown RBP15.35■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 TCP10L2B9ZVM9 353 aa15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CIAO1O76071 339 aa15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 IFIT1P09914 478 aaKnown RBP15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 CHAF1AQ13111 956 aaPredicted RBP15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 FBXO46Q6PJ61 603 aaPredicted RBP15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 FAM83AQ86UY5 434 aa15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 TEKT1Q969V4 418 aa15.34■□□□□ 0.05
MSH5-SAPCD1-205ENST00000476085 RARSP54136 660 aaKnown RBP15.33■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 MAP3K9P80192 1104 aa15.33■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 UBTFL1P0CB47 393 aaPredicted RBP15.32■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 TNNI2P48788 182 aa15.32■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 SOX10P56693 466 aa15.32■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 ARHGAP45Q92619 1136 aa15.32■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 OPTNQ96CV9 577 aa15.32■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 FRAT2O75474 233 aaPredicted RBP15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 SLC5A1P13866 664 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 CACNB3P54284 484 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 CAP1Q01518 475 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 CRHR2Q13324 411 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 VGLL4Q14135 290 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 INTS3Q68E01 1043 aaKnown RBP15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 WDR66Q8TBY9 1149 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 CNKSR2Q8WXI2 1034 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 API5Q9BZZ5 524 aaKnown RBP15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 ELP3Q9H9T3 547 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 COPRSQ9NQ92 184 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 MAST3O60307 1309 aa15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 MKI67P46013 3256 aaKnown RBP15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 KIAA0100Q14667 2235 aaKnown RBP15.31■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 BRI3BPQ8WY22 251 aa15.3■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 RPAP1Q9BWH6 1393 aaPredicted RBP15.3■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 LRRFIP2Q9Y608 721 aaKnown RBP15.3■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 BRCA2P51587 3418 aa15.3■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 SALL1Q9NSC2 1324 aa15.29■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 IL15P40933 162 aaPredicted RBP15.29■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 OTUD7BQ6GQQ9 843 aa15.29■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 OTOP1Q7RTM1 612 aa15.29■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 MEIS3Q99687 375 aa15.29■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 CEP126Q9P2H0 1117 aa15.29■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 PA2G4Q9UQ80 394 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 SPDYE5A6NIY4 337 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 MTX1Q13505 466 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 ATP2B3Q16720 1220 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 SIL1Q9H173 461 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 ZNF112Q9UJU3 913 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 HDAC5Q9UQL6 1122 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 DAGLAQ9Y4D2 1042 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 SNCAIPQ9Y6H5 919 aa15.28■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 SEMA3EO15041 775 aa15.27■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 PRDX5P30044 214 aa15.27■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 PHKA1P46020 1223 aa15.27■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 GTF2A2P52657 109 aa15.27■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 CDC42EP5Q6NZY7 148 aa15.27■□□□□ 0.04
MSH5-SAPCD1-205ENST00000476085 FAM151AQ8WW52 585 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms