RNA–Protein interactions for RNA: ENST00000475944.1

CDRT1-205, CMT1A duplicated region transcript 1, humanhuman

TSL 3

Gene CDRT1, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-205ENST00000475944 OTOFQ9HC10 1997 aa13.63□□□□□ -0.23
CDRT1-205ENST00000475944 PDE4DIPQ5VU43 2346 aa13.63□□□□□ -0.23
CDRT1-205ENST00000475944 TESPA1A2RU30 521 aaPredicted RBP13.63□□□□□ -0.23
CDRT1-205ENST00000475944 ZNF316A6NFI3 1004 aaPredicted RBP13.63□□□□□ -0.23
CDRT1-205ENST00000475944 TCP10L2B9ZVM9 353 aa13.63□□□□□ -0.23
CDRT1-205ENST00000475944 ZEB1P37275 1124 aaPredicted RBP13.63□□□□□ -0.23
CDRT1-205ENST00000475944 HDLBPQ00341 1268 aaKnown RBP13.63□□□□□ -0.23
CDRT1-205ENST00000475944 RABL6Q3YEC7 729 aaPredicted RBP13.63□□□□□ -0.23
CDRT1-205ENST00000475944 METTL24Q5JXM2 366 aa13.63□□□□□ -0.23
CDRT1-205ENST00000475944 INTS3Q68E01 1043 aaKnown RBP13.63□□□□□ -0.23
CDRT1-205ENST00000475944 FBXO33Q7Z6M2 555 aa13.63□□□□□ -0.23
CDRT1-205ENST00000475944 ELP3Q9H9T3 547 aa13.63□□□□□ -0.23
CDRT1-205ENST00000475944 PCDH10Q9P2E7 1040 aa13.63□□□□□ -0.23
CDRT1-205ENST00000475944 PDE8BO95263 885 aa13.62□□□□□ -0.23
CDRT1-205ENST00000475944 CHAF1AQ13111 956 aaPredicted RBP13.62□□□□□ -0.23
CDRT1-205ENST00000475944 CD99L2Q8TCZ2 262 aa13.62□□□□□ -0.23
CDRT1-205ENST00000475944 TEPSINQ96N21 525 aa13.62□□□□□ -0.23
CDRT1-205ENST00000475944 TMEM39BQ9GZU3 492 aa13.62□□□□□ -0.23
CDRT1-205ENST00000475944 IQSEC3Q9UPP2 1182 aaPredicted RBP13.62□□□□□ -0.23
CDRT1-205ENST00000475944 PTPRCP08575 1304 aa13.62□□□□□ -0.23
CDRT1-205ENST00000475944 MAP3K9P80192 1104 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 SP3Q02447 781 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 LRRC24Q50LG9 513 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.61□□□□□ -0.23
CDRT1-205ENST00000475944 TEKT1Q969V4 418 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 PTPN18Q99952 460 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 EFCC1Q9HA90 598 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 TMOD2Q9NZR1 351 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 CSADQ9Y600 493 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 MAST3O60307 1309 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 ZNF521Q96K83 1311 aa13.61□□□□□ -0.23
CDRT1-205ENST00000475944 GTF2A2P52657 109 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 VGLL4Q14135 290 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 ARHGEF6Q15052 776 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 GRIK5Q16478 980 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 CDAN1Q8IWY9 1227 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 MRPL50Q8N5N7 158 aaKnown RBP13.6□□□□□ -0.23
CDRT1-205ENST00000475944 ANKRD44Q8N8A2 993 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 VGLL2Q8N8G2 317 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.6□□□□□ -0.23
CDRT1-205ENST00000475944 HOOK2Q96ED9 719 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 MS4A4AQ96JQ5 239 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 PTPN22Q9Y2R2 807 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 SUGT1Q9Y2Z0 365 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 KIF16BQ96L93 1317 aa13.6□□□□□ -0.23
CDRT1-205ENST00000475944 CCL15-CCL14A0A0B4J2E2 113 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 WDHD1O75717 1129 aaPredicted RBP13.59□□□□□ -0.23
CDRT1-205ENST00000475944 IFIT1P09914 478 aaKnown RBP13.59□□□□□ -0.23
CDRT1-205ENST00000475944 PUM3Q15397 648 aaKnown RBP13.59□□□□□ -0.23
CDRT1-205ENST00000475944 TAF1CQ15572 869 aaPredicted RBP13.59□□□□□ -0.23
CDRT1-205ENST00000475944 CCL15Q16663 113 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 CNKSR2Q8WXI2 1034 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 BRI3BPQ8WY22 251 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 OTUD5Q96G74 571 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 ZDHHC15Q96MV8 337 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 MRIQ9BWK5 157 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 ZFYVE28Q9HCC9 887 aa13.59□□□□□ -0.23
CDRT1-205ENST00000475944 SPDYE5A6NIY4 337 aa13.58□□□□□ -0.24
CDRT1-205ENST00000475944 E9PSI1 815 aa13.58□□□□□ -0.24
CDRT1-205ENST00000475944 BCAMP50895 628 aa13.58□□□□□ -0.24
CDRT1-205ENST00000475944 FKBP1CQ5VVH2 108 aa13.58□□□□□ -0.24
CDRT1-205ENST00000475944 FAM83AQ86UY5 434 aa13.58□□□□□ -0.24
CDRT1-205ENST00000475944 POTEFA5A3E0 1075 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 CACNB3P54284 484 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 ERO1BQ86YB8 467 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 KLHDC4Q8TBB5 520 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 ARMC5Q96C12 935 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 GCC1Q96CN9 775 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 WRNIP1Q96S55 665 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 USP44Q9H0E7 712 aa13.57□□□□□ -0.24
CDRT1-205ENST00000475944 RBBP6Q7Z6E9 1792 aaKnown RBP13.57□□□□□ -0.24
CDRT1-205ENST00000475944 RPAP1Q9BWH6 1393 aaPredicted RBP13.57□□□□□ -0.24
CDRT1-205ENST00000475944 CETPP11597 493 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 SLC5A1P13866 664 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 FGFR2P21802 821 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 DCAF15Q66K64 600 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 APOBEC3HQ6NTF7 200 aaKnown RBP13.56□□□□□ -0.24
CDRT1-205ENST00000475944 HHIPL2Q6UWX4 724 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 WDR66Q8TBY9 1149 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 SSH1Q8WYL5 1049 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 ZCCHC17Q9NP64 241 aaKnown RBP13.56□□□□□ -0.24
CDRT1-205ENST00000475944 SNCAIPQ9Y6H5 919 aa13.56□□□□□ -0.24
CDRT1-205ENST00000475944 EYA2O00167 538 aa13.55□□□□□ -0.24
CDRT1-205ENST00000475944 SNAPC2Q13487 334 aa13.55□□□□□ -0.24
CDRT1-205ENST00000475944 NBPF11Q86T75 865 aa13.55□□□□□ -0.24
CDRT1-205ENST00000475944 FAM43AQ8N2R8 423 aa13.55□□□□□ -0.24
CDRT1-205ENST00000475944 LPIN2Q92539 896 aa13.55□□□□□ -0.24
CDRT1-205ENST00000475944 TMEM106CQ9BVX2 250 aa13.55□□□□□ -0.24
CDRT1-205ENST00000475944 TLR2O60603 784 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 CAP1Q01518 475 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 PPIL2Q13356 520 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 KIF22Q14807 665 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 ALDH1L2Q3SY69 923 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 SLC9C1Q4G0N8 1177 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 ZKSCAN4Q969J2 545 aaPredicted RBP13.54□□□□□ -0.24
CDRT1-205ENST00000475944 ZNF333Q96JL9 665 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 ZNF341Q9BYN7 854 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 MYH13Q9UKX3 1938 aa13.54□□□□□ -0.24
CDRT1-205ENST00000475944 HTTP42858 3142 aa13.53□□□□□ -0.24
CDRT1-205ENST00000475944 BTBD19C9JJ37 291 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms