RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.82□□□□□ -1
HDAC3-207ENST00000475549 CTU1Q7Z7A3 348 aaKnown RBP8.82□□□□□ -1
HDAC3-207ENST00000475549 IFNL1Q8IU54 200 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 PTPN18Q99952 460 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 CFHR5Q9BXR6 569 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 TMEM39BQ9GZU3 492 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 SMC4Q9NTJ3 1288 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.82□□□□□ -1
HDAC3-207ENST00000475549 MYH3P11055 1940 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 TCP10L2B9ZVM9 353 aa8.81□□□□□ -1
HDAC3-207ENST00000475549 PPP1R12BO60237 982 aaPredicted RBP8.81□□□□□ -1
HDAC3-207ENST00000475549 MYCNP04198 464 aaPredicted RBP8.81□□□□□ -1
HDAC3-207ENST00000475549 RARSP54136 660 aaKnown RBP8.81□□□□□ -1
HDAC3-207ENST00000475549 CAP1Q01518 475 aa8.81□□□□□ -1
HDAC3-207ENST00000475549 CACNB1Q02641 598 aaPredicted RBP8.81□□□□□ -1
HDAC3-207ENST00000475549 MLLT1Q03111 559 aaPredicted RBP8.81□□□□□ -1
HDAC3-207ENST00000475549 CHAF1AQ13111 956 aaPredicted RBP8.81□□□□□ -1
HDAC3-207ENST00000475549 CAVIN4Q5BKX8 364 aa8.81□□□□□ -1
HDAC3-207ENST00000475549 NOM1Q5C9Z4 860 aaKnown RBP8.81□□□□□ -1
HDAC3-207ENST00000475549 VPS37DQ86XT2 251 aa8.81□□□□□ -1
HDAC3-207ENST00000475549 WNK4Q96J92 1243 aa8.81□□□□□ -1
HDAC3-207ENST00000475549 MRIQ9BWK5 157 aa8.81□□□□□ -1
HDAC3-207ENST00000475549 HTTP42858 3142 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 TESPA1A2RU30 521 aaPredicted RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 UNCXA6NJT0 531 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 CCER2I3L3R5 266 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 ZBTB48P10074 688 aaPredicted RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 SOX10P56693 466 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 HDLBPQ00341 1268 aaKnown RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 SREBF2Q12772 1141 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 PUM3Q15397 648 aaKnown RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 MS4A4AQ96JQ5 239 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 ZDHHC15Q96MV8 337 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 MEIS3Q99687 375 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 SIL1Q9H173 461 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 HPS5Q9UPZ3 1129 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 PA2G4Q9UQ80 394 aaKnown RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 LRRFIP2Q9Y608 721 aaKnown RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 U3KPZ7 1027 aaPredicted RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 COL1A1P02452 1464 aaPredicted RBP8.8□□□□□ -1
HDAC3-207ENST00000475549 CASP8AP2Q9UKL3 1982 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 KIF16BQ96L93 1317 aa8.8□□□□□ -1
HDAC3-207ENST00000475549 MANSC4A6NHS7 340 aaPredicted RBP8.79□□□□□ -1
HDAC3-207ENST00000475549 TNRC18O15417 2968 aaPredicted RBP8.79□□□□□ -1
HDAC3-207ENST00000475549 CIAO1O76071 339 aa8.79□□□□□ -1
HDAC3-207ENST00000475549 CT47B1P0C2W7 299 aaPredicted RBP8.79□□□□□ -1
HDAC3-207ENST00000475549 IREB2P48200 963 aaKnown RBP8.79□□□□□ -1
HDAC3-207ENST00000475549 INHBEP58166 350 aa8.79□□□□□ -1
HDAC3-207ENST00000475549 ANKRD13AQ8IZ07 590 aa8.79□□□□□ -1
HDAC3-207ENST00000475549 TBC1D22AQ8WUA7 517 aa8.79□□□□□ -1
HDAC3-207ENST00000475549 LPIN2Q92539 896 aa8.79□□□□□ -1
HDAC3-207ENST00000475549 ELP3Q9H9T3 547 aa8.79□□□□□ -1
HDAC3-207ENST00000475549 TNNQ9UQP3 1299 aa8.79□□□□□ -1
HDAC3-207ENST00000475549 FKTNO75072 461 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 FRAT2O75474 233 aaPredicted RBP8.78□□□□□ -1
HDAC3-207ENST00000475549 ALDH1A1P00352 501 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 IFIT1P09914 478 aaKnown RBP8.78□□□□□ -1
HDAC3-207ENST00000475549 UBTFL1P0CB47 393 aaPredicted RBP8.78□□□□□ -1
HDAC3-207ENST00000475549 ADORA1P30542 326 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 MAP3K9P80192 1104 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 TNFAIP1Q13829 316 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 VGLL4Q14135 290 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 DIXDC1Q155Q3 683 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 INTS3Q68E01 1043 aaKnown RBP8.78□□□□□ -1
HDAC3-207ENST00000475549 HHIPL2Q6UWX4 724 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.78□□□□□ -1
HDAC3-207ENST00000475549 TEKT1Q969V4 418 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 OPTNQ96CV9 577 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 API5Q9BZZ5 524 aaKnown RBP8.78□□□□□ -1
HDAC3-207ENST00000475549 COPRSQ9NQ92 184 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 SUGT1Q9Y2Z0 365 aa8.78□□□□□ -1
HDAC3-207ENST00000475549 CACNA1FO60840 1977 aa8.77□□□□□ -1
HDAC3-207ENST00000475549 A0A1B0GUL6 1792 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 BCAR3O75815 825 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 SLC5A1P13866 664 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 PRDX5P30044 214 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 PHKA1P46020 1223 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 TIMM10P62072 90 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 NFIAQ12857 509 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 CRHR2Q13324 411 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 PKN2Q16513 984 aaKnown RBP8.77□□□□□ -1.01
HDAC3-207ENST00000475549 ATP2B3Q16720 1220 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 CDC42EP5Q6NZY7 148 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 SAMD1Q6SPF0 538 aaPredicted RBP8.77□□□□□ -1.01
HDAC3-207ENST00000475549 ZFPM1Q8IX07 1006 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 BRI3BPQ8WY22 251 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 ARHGAP45Q92619 1136 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 ZKSCAN4Q969J2 545 aaPredicted RBP8.77□□□□□ -1.01
HDAC3-207ENST00000475549 CEP126Q9P2H0 1117 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 FBXO3Q9UK99 471 aa8.77□□□□□ -1.01
HDAC3-207ENST00000475549 CENPFP49454 3210 aa8.76□□□□□ -1.01
HDAC3-207ENST00000475549 TRIM27P14373 513 aa8.76□□□□□ -1.01
HDAC3-207ENST00000475549 IL15P40933 162 aaPredicted RBP8.76□□□□□ -1.01
HDAC3-207ENST00000475549 TNNI2P48788 182 aa8.76□□□□□ -1.01
HDAC3-207ENST00000475549 FKBP1CQ5VVH2 108 aa8.76□□□□□ -1.01
HDAC3-207ENST00000475549 FBXO46Q6PJ61 603 aaPredicted RBP8.76□□□□□ -1.01
HDAC3-207ENST00000475549 MIGA2Q7L4E1 593 aa8.76□□□□□ -1.01
HDAC3-207ENST00000475549 FAM83AQ86UY5 434 aa8.76□□□□□ -1.01
HDAC3-207ENST00000475549 FAM43AQ8N2R8 423 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms