RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 TTF2Q9UNY4 1162 aaKnown RBP15.98■□□□□ 0.15
SKA3-206ENST00000475251 JAG2Q9Y219 1238 aa15.98■□□□□ 0.15
SKA3-206ENST00000475251 CSADQ9Y600 493 aa15.98■□□□□ 0.15
SKA3-206ENST00000475251 OTOFQ9HC10 1997 aa15.97■□□□□ 0.15
SKA3-206ENST00000475251 PLIN1O60240 522 aa15.97■□□□□ 0.15
SKA3-206ENST00000475251 EN2P19622 333 aaPredicted RBP15.97■□□□□ 0.15
SKA3-206ENST00000475251 UBE4AQ14139 1066 aa15.97■□□□□ 0.15
SKA3-206ENST00000475251 LMBR1LQ6UX01 489 aa15.97■□□□□ 0.15
SKA3-206ENST00000475251 MS4A4AQ96JQ5 239 aa15.97■□□□□ 0.15
SKA3-206ENST00000475251 CCL15-CCL14A0A0B4J2E2 113 aa15.96■□□□□ 0.15
SKA3-206ENST00000475251 HIBADHP31937 336 aaKnown RBP15.96■□□□□ 0.15
SKA3-206ENST00000475251 MAP3K9P80192 1104 aa15.96■□□□□ 0.15
SKA3-206ENST00000475251 KIF22Q14807 665 aa15.96■□□□□ 0.15
SKA3-206ENST00000475251 CCL15Q16663 113 aa15.96■□□□□ 0.15
SKA3-206ENST00000475251 DZIP1LQ8IYY4 767 aaKnown RBP15.96■□□□□ 0.15
SKA3-206ENST00000475251 TDRD7Q8NHU6 1098 aaKnown RBP15.96■□□□□ 0.15
SKA3-206ENST00000475251 TDRD3Q9H7E2 651 aaKnown RBP15.96■□□□□ 0.15
SKA3-206ENST00000475251 ARAP2Q8WZ64 1704 aa15.96■□□□□ 0.15
SKA3-206ENST00000475251 FANCIQ9NVI1 1328 aa15.95■□□□□ 0.14
SKA3-206ENST00000475251 GRM8O00222 908 aa15.95■□□□□ 0.14
SKA3-206ENST00000475251 SLC4A8Q2Y0W8 1093 aa15.95■□□□□ 0.14
SKA3-206ENST00000475251 BEND3Q5T5X7 828 aa15.95■□□□□ 0.14
SKA3-206ENST00000475251 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.95■□□□□ 0.14
SKA3-206ENST00000475251 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.95■□□□□ 0.14
SKA3-206ENST00000475251 BRI3BPQ8WY22 251 aa15.95■□□□□ 0.14
SKA3-206ENST00000475251 HOOK2Q96ED9 719 aa15.95■□□□□ 0.14
SKA3-206ENST00000475251 ZCCHC17Q9NP64 241 aaKnown RBP15.95■□□□□ 0.14
SKA3-206ENST00000475251 MKI67P46013 3256 aaKnown RBP15.95■□□□□ 0.14
SKA3-206ENST00000475251 AOX1Q06278 1338 aa15.94■□□□□ 0.14
SKA3-206ENST00000475251 GNRH1P01148 92 aa15.94■□□□□ 0.14
SKA3-206ENST00000475251 CRKP46108 304 aa15.94■□□□□ 0.14
SKA3-206ENST00000475251 VGLL4Q14135 290 aa15.94■□□□□ 0.14
SKA3-206ENST00000475251 VPS37DQ86XT2 251 aa15.94■□□□□ 0.14
SKA3-206ENST00000475251 TEPSINQ96N21 525 aa15.94■□□□□ 0.14
SKA3-206ENST00000475251 C9orf78Q9NZ63 289 aaPredicted RBP15.94■□□□□ 0.14
SKA3-206ENST00000475251 PTCH2Q9Y6C5 1203 aa15.94■□□□□ 0.14
SKA3-206ENST00000475251 TCP10L2B9ZVM9 353 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 VAMP4O75379 141 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 CETPP11597 493 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 PRMT2P55345 433 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 HDLBPQ00341 1268 aaKnown RBP15.93■□□□□ 0.14
SKA3-206ENST00000475251 TBC1D22AQ8WUA7 517 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 OTUD5Q96G74 571 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 ZNF594Q96JF6 807 aaPredicted RBP15.93■□□□□ 0.14
SKA3-206ENST00000475251 TMEM39BQ9GZU3 492 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 TMOD2Q9NZR1 351 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 CENPFP49454 3210 aa15.93■□□□□ 0.14
SKA3-206ENST00000475251 KIAA0100Q14667 2235 aaKnown RBP15.92■□□□□ 0.14
SKA3-206ENST00000475251 SPDYE5A6NIY4 337 aa15.92■□□□□ 0.14
SKA3-206ENST00000475251 F6X3S4 739 aa15.92■□□□□ 0.14
SKA3-206ENST00000475251 TLR2O60603 784 aa15.92■□□□□ 0.14
SKA3-206ENST00000475251 ALDH1L1O75891 902 aa15.92■□□□□ 0.14
SKA3-206ENST00000475251 GYG1P46976 350 aa15.92■□□□□ 0.14
SKA3-206ENST00000475251 FXR1P51114 621 aaKnown RBP eCLIP15.92■□□□□ 0.14
SKA3-206ENST00000475251 WDR63Q8IWG1 891 aa15.92■□□□□ 0.14
SKA3-206ENST00000475251 MROH5Q6ZUA9 1318 aa15.92■□□□□ 0.14
SKA3-206ENST00000475251 FRAT2O75474 233 aaPredicted RBP15.91■□□□□ 0.14
SKA3-206ENST00000475251 SNAPC2Q13487 334 aa15.91■□□□□ 0.14
SKA3-206ENST00000475251 CAVIN4Q5BKX8 364 aa15.91■□□□□ 0.14
SKA3-206ENST00000475251 ERO1BQ86YB8 467 aa15.91■□□□□ 0.14
SKA3-206ENST00000475251 FAM43AQ8N2R8 423 aa15.91■□□□□ 0.14
SKA3-206ENST00000475251 TEKT1Q969V4 418 aa15.91■□□□□ 0.14
SKA3-206ENST00000475251 FAM84BQ96KN1 310 aaPredicted RBP15.91■□□□□ 0.14
SKA3-206ENST00000475251 MAST3O60307 1309 aa15.91■□□□□ 0.14
SKA3-206ENST00000475251 LACTBP83111 547 aaPredicted RBP15.9■□□□□ 0.14
SKA3-206ENST00000475251 CAP1Q01518 475 aa15.9■□□□□ 0.14
SKA3-206ENST00000475251 EPHA10Q5JZY3 1008 aa15.9■□□□□ 0.14
SKA3-206ENST00000475251 FAM83AQ86UY5 434 aa15.9■□□□□ 0.14
SKA3-206ENST00000475251 EXOSC9Q06265 439 aaKnown RBP15.89■□□□□ 0.13
SKA3-206ENST00000475251 FKBP1CQ5VVH2 108 aa15.89■□□□□ 0.13
SKA3-206ENST00000475251 DCAF15Q66K64 600 aa15.89■□□□□ 0.13
SKA3-206ENST00000475251 CDAN1Q8IWY9 1227 aa15.89■□□□□ 0.13
SKA3-206ENST00000475251 WRNIP1Q96S55 665 aa15.89■□□□□ 0.13
SKA3-206ENST00000475251 SRCIN1Q9C0H9 1055 aa15.89■□□□□ 0.13
SKA3-206ENST00000475251 COLQQ9Y215 455 aaPredicted RBP15.89■□□□□ 0.13
SKA3-206ENST00000475251 BRCA2P51587 3418 aa15.88■□□□□ 0.13
SKA3-206ENST00000475251 PPIL2Q13356 520 aa15.88■□□□□ 0.13
SKA3-206ENST00000475251 MRIQ9BWK5 157 aa15.88■□□□□ 0.13
SKA3-206ENST00000475251 SUGT1Q9Y2Z0 365 aa15.88■□□□□ 0.13
SKA3-206ENST00000475251 SNCAIPQ9Y6H5 919 aa15.88■□□□□ 0.13
SKA3-206ENST00000475251 RPAP1Q9BWH6 1393 aaPredicted RBP15.87■□□□□ 0.13
SKA3-206ENST00000475251 BTBD19C9JJ37 291 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 IRF6O14896 467 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 HOXD10P28358 340 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 PPATQ06203 517 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 CHAF1AQ13111 956 aaPredicted RBP15.87■□□□□ 0.13
SKA3-206ENST00000475251 SLC4A10Q6U841 1118 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 FBXO33Q7Z6M2 555 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 NKX2-3Q8TAU0 364 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 ZDHHC15Q96MV8 337 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 RIPOR2Q9Y4F9 1068 aa15.87■□□□□ 0.13
SKA3-206ENST00000475251 MYCP01106 439 aaPredicted RBP15.86■□□□□ 0.13
SKA3-206ENST00000475251 METTL24Q5JXM2 366 aa15.86■□□□□ 0.13
SKA3-206ENST00000475251 SH3TC2Q8TF17 1288 aa15.86■□□□□ 0.13
SKA3-206ENST00000475251 ZNF341Q9BYN7 854 aa15.86■□□□□ 0.13
SKA3-206ENST00000475251 PUS3Q9BZE2 481 aaKnown RBP15.86■□□□□ 0.13
SKA3-206ENST00000475251 ZKSCAN4Q969J2 545 aaPredicted RBP15.85■□□□□ 0.13
SKA3-206ENST00000475251 SUCLG2Q96I99 432 aa15.85■□□□□ 0.13
SKA3-206ENST00000475251 ARHGAP39Q9C0H5 1083 aa15.85■□□□□ 0.13
SKA3-206ENST00000475251 IQSEC3Q9UPP2 1182 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms