RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 ATP8B2P98198 1209 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 TFCP2Q12800 502 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 MOB2Q70IA6 237 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 ITPRIPQ8IWB1 547 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 ZIC5Q96T25 663 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 GNL3LQ9NVN8 582 aaKnown RBP13.06□□□□□ -0.32
COL4A1-203ENST00000474391 ZNF70Q9UC06 446 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-203ENST00000474391 AKAP2Q9Y2D5 859 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-203ENST00000474391 MAST3O60307 1309 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 A0A1B0GUL7 405 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 CA12O43570 354 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 HSPA8P11142 646 aaKnown RBP13.05□□□□□ -0.32
COL4A1-203ENST00000474391 ADORA1P30542 326 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 CCDC102BQ68D86 513 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 RASAL3Q86YV0 1011 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 TEKT1Q969V4 418 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 ZDHHC15Q96MV8 337 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 TDRD3Q9H7E2 651 aaKnown RBP13.05□□□□□ -0.32
COL4A1-203ENST00000474391 SSC5DA1L4H1 1573 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 PDS5AQ29RF7 1337 aaKnown RBP13.05□□□□□ -0.32
COL4A1-203ENST00000474391 SALL1Q9NSC2 1324 aa13.05□□□□□ -0.32
COL4A1-203ENST00000474391 UBE2Q2LH0YL09 131 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 MS4A1P11836 297 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 TNFAIP1Q13829 316 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 RASA3Q14644 834 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 MAP3K11Q16584 847 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 LDLRAD1Q5T700 205 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 IFFO2Q5TF58 517 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 APOBEC3HQ6NTF7 200 aaKnown RBP13.04□□□□□ -0.32
COL4A1-203ENST00000474391 HHIPL2Q6UWX4 724 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 PANK1Q8TE04 598 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 BEGAINQ9BUH8 593 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 VEZTQ9HBM0 779 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 DENND2AQ9ULE3 1009 aa13.04□□□□□ -0.32
COL4A1-203ENST00000474391 LBX1P52954 281 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 KIF23Q02241 960 aaPredicted RBP13.03□□□□□ -0.32
COL4A1-203ENST00000474391 G3BP1Q13283 466 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL4A1-203ENST00000474391 MVPQ14764 893 aaKnown RBP13.03□□□□□ -0.32
COL4A1-203ENST00000474391 SUPT20HL1Q3ZLR7 823 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 ARMC9Q7Z3E5 817 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 XAGE2Q96GT9 111 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 TEPSINQ96N21 525 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 C1orf115Q9H7X2 142 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 GPR108Q9NPR9 543 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 RCAN3Q9UKA8 241 aa13.03□□□□□ -0.32
COL4A1-203ENST00000474391 NOP58Q9Y2X3 529 aaKnown RBP13.03□□□□□ -0.32
COL4A1-203ENST00000474391 MYH13Q9UKX3 1938 aa13.02□□□□□ -0.32
COL4A1-203ENST00000474391 UNCXA6NJT0 531 aa13.02□□□□□ -0.33
COL4A1-203ENST00000474391 PRDX5P30044 214 aa13.02□□□□□ -0.33
COL4A1-203ENST00000474391 RASGRF1Q13972 1273 aa13.02□□□□□ -0.33
COL4A1-203ENST00000474391 TTLL12Q14166 644 aaPredicted RBP13.02□□□□□ -0.33
COL4A1-203ENST00000474391 NBPF12Q5TAG4 269 aaPredicted RBP13.02□□□□□ -0.33
COL4A1-203ENST00000474391 FKBP1CQ5VVH2 108 aa13.02□□□□□ -0.33
COL4A1-203ENST00000474391 CEP85Q6P2H3 762 aa13.02□□□□□ -0.33
COL4A1-203ENST00000474391 REM2Q8IYK8 340 aaPredicted RBP13.02□□□□□ -0.33
COL4A1-203ENST00000474391 PPP1R12BO60237 982 aaPredicted RBP13.01□□□□□ -0.33
COL4A1-203ENST00000474391 TNNI2P48788 182 aa13.01□□□□□ -0.33
COL4A1-203ENST00000474391 PRKG1Q13976 671 aa13.01□□□□□ -0.33
COL4A1-203ENST00000474391 FAM83AQ86UY5 434 aa13.01□□□□□ -0.33
COL4A1-203ENST00000474391 ZGPATQ8N5A5 531 aaKnown RBP13.01□□□□□ -0.33
COL4A1-203ENST00000474391 CSRNP1Q96S65 589 aa13.01□□□□□ -0.33
COL4A1-203ENST00000474391 SAGE1Q9NXZ1 904 aa13.01□□□□□ -0.33
COL4A1-203ENST00000474391 ANGEL1Q9UNK9 670 aaKnown RBP13.01□□□□□ -0.33
COL4A1-203ENST00000474391 FZD1Q9UP38 647 aa13.01□□□□□ -0.33
COL4A1-203ENST00000474391 TCP10L2B9ZVM9 353 aa13□□□□□ -0.33
COL4A1-203ENST00000474391 USP2O75604 605 aaPredicted RBP13□□□□□ -0.33
COL4A1-203ENST00000474391 SURF6O75683 361 aaKnown RBP13□□□□□ -0.33
COL4A1-203ENST00000474391 LDHBP07195 334 aaKnown RBP13□□□□□ -0.33
COL4A1-203ENST00000474391 ARID4AP29374 1257 aaPredicted RBP13□□□□□ -0.33
COL4A1-203ENST00000474391 TNS4Q8IZW8 715 aa13□□□□□ -0.33
COL4A1-203ENST00000474391 NEUROD6Q96NK8 337 aa13□□□□□ -0.33
COL4A1-203ENST00000474391 DAGLAQ9Y4D2 1042 aa13□□□□□ -0.33
COL4A1-203ENST00000474391 CACNB3P54284 484 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 DIXDC1Q155Q3 683 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 TNNI3KQ59H18 835 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 CDAN1Q8IWY9 1227 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 TMEM39BQ9GZU3 492 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 ZBTB40Q9NUA8 1239 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 HMG20BQ9P0W2 317 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 DDX19BQ9UMR2 479 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 FPGT-TNNI3KV9GXZ4 949 aa12.99□□□□□ -0.33
COL4A1-203ENST00000474391 RPAP1Q9BWH6 1393 aaPredicted RBP12.98□□□□□ -0.33
COL4A1-203ENST00000474391 GAKO14976 1311 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 TM4SF4P48230 202 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 PDE3AQ14432 1141 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 SPRYD7Q5W111 196 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 SPATA5Q8NB90 893 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 FAM163AQ96GL9 167 aaPredicted RBP12.98□□□□□ -0.33
COL4A1-203ENST00000474391 RNF186Q9NXI6 227 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 TMOD2Q9NZR1 351 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 TSKSQ9UJT2 592 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 COG6Q9Y2V7 657 aa12.98□□□□□ -0.33
COL4A1-203ENST00000474391 UQCRFS1P1P0C7P4 283 aa12.97□□□□□ -0.33
COL4A1-203ENST00000474391 ZBTB48P10074 688 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-203ENST00000474391 IREB2P48200 963 aaKnown RBP12.97□□□□□ -0.33
COL4A1-203ENST00000474391 OS9Q13438 667 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-203ENST00000474391 GORABQ5T7V8 394 aa12.97□□□□□ -0.33
COL4A1-203ENST00000474391 SPTY2D1Q68D10 685 aaPredicted RBP12.97□□□□□ -0.33
COL4A1-203ENST00000474391 CDC42EP5Q6NZY7 148 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms