RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 SALL1Q9NSC2 1324 aa23.34■■□□□ 1.33
PTCD3-210ENST00000473829 APOBEC3FQ8IUX4 373 aaKnown RBP23.34■■□□□ 1.33
PTCD3-210ENST00000473829 TLR7Q9NYK1 1049 aaKnown RBP23.34■■□□□ 1.33
PTCD3-210ENST00000473829 SUGT1Q9Y2Z0 365 aa23.34■■□□□ 1.33
PTCD3-210ENST00000473829 VEGFBP49765 207 aa23.33■■□□□ 1.33
PTCD3-210ENST00000473829 DEFB115Q30KQ5 88 aa23.33■■□□□ 1.33
PTCD3-210ENST00000473829 PI16Q6UXB8 463 aa23.33■■□□□ 1.33
PTCD3-210ENST00000473829 AKAP11Q9UKA4 1901 aa23.33■■□□□ 1.32
PTCD3-210ENST00000473829 THSD7BQ9C0I4 1608 aa23.33■■□□□ 1.32
PTCD3-210ENST00000473829 PDS5AQ29RF7 1337 aaKnown RBP23.33■■□□□ 1.32
PTCD3-210ENST00000473829 PAPPA2Q9BXP8 1791 aa23.32■■□□□ 1.32
PTCD3-210ENST00000473829 ARID4AP29374 1257 aaPredicted RBP23.32■■□□□ 1.32
PTCD3-210ENST00000473829 HDLBPQ00341 1268 aaKnown RBP23.32■■□□□ 1.32
PTCD3-210ENST00000473829 GORABQ5T7V8 394 aa23.32■■□□□ 1.32
PTCD3-210ENST00000473829 TEKT1Q969V4 418 aa23.32■■□□□ 1.32
PTCD3-210ENST00000473829 EAF2Q96CJ1 260 aaPredicted RBP23.32■■□□□ 1.32
PTCD3-210ENST00000473829 TDRD3Q9H7E2 651 aaKnown RBP23.32■■□□□ 1.32
PTCD3-210ENST00000473829 GBA2Q9HCG7 927 aaPredicted RBP23.32■■□□□ 1.32
PTCD3-210ENST00000473829 HMG20BQ9P0W2 317 aa23.32■■□□□ 1.32
PTCD3-210ENST00000473829 MAST3O60307 1309 aa23.32■■□□□ 1.32
PTCD3-210ENST00000473829 MYO1BO43795 1136 aa23.31■■□□□ 1.32
PTCD3-210ENST00000473829 HMMRO75330 724 aa23.31■■□□□ 1.32
PTCD3-210ENST00000473829 SPDYE2Q495Y8 402 aa23.31■■□□□ 1.32
PTCD3-210ENST00000473829 VEZTQ9HBM0 779 aa23.31■■□□□ 1.32
PTCD3-210ENST00000473829 ZNF70Q9UC06 446 aaPredicted RBP23.31■■□□□ 1.32
PTCD3-210ENST00000473829 DBNLQ9UJU6 430 aaKnown RBP23.31■■□□□ 1.32
PTCD3-210ENST00000473829 MCAMP43121 646 aa23.3■■□□□ 1.32
PTCD3-210ENST00000473829 DIXDC1Q155Q3 683 aa23.3■■□□□ 1.32
PTCD3-210ENST00000473829 CYP4F22Q6NT55 531 aa23.3■■□□□ 1.32
PTCD3-210ENST00000473829 ZDHHC15Q96MV8 337 aa23.3■■□□□ 1.32
PTCD3-210ENST00000473829 CCDC8Q9H0W5 538 aaPredicted RBP23.3■■□□□ 1.32
PTCD3-210ENST00000473829 SSC5DA1L4H1 1573 aa23.3■■□□□ 1.32
PTCD3-210ENST00000473829 MYH2Q9UKX2 1941 aa23.29■■□□□ 1.32
PTCD3-210ENST00000473829 LDHBP07195 334 aaKnown RBP23.29■■□□□ 1.32
PTCD3-210ENST00000473829 ERC1Q8IUD2 1116 aa23.29■■□□□ 1.32
PTCD3-210ENST00000473829 SPATA5Q8NB90 893 aa23.29■■□□□ 1.32
PTCD3-210ENST00000473829 RHPN1Q8TCX5 695 aa23.29■■□□□ 1.32
PTCD3-210ENST00000473829 MRIQ9BWK5 157 aa23.29■■□□□ 1.32
PTCD3-210ENST00000473829 DEFB129Q9H1M3 183 aa23.29■■□□□ 1.32
PTCD3-210ENST00000473829 IL1RAPL2Q9NP60 686 aa23.29■■□□□ 1.32
PTCD3-210ENST00000473829 APBB1O00213 710 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 HUNKP57058 714 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 HSP90AB4PQ58FF6 505 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 APOBEC3HQ6NTF7 200 aaKnown RBP23.28■■□□□ 1.32
PTCD3-210ENST00000473829 HHIPL2Q6UWX4 724 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 PAXIP1Q6ZW49 1069 aaPredicted RBP23.28■■□□□ 1.32
PTCD3-210ENST00000473829 MOB2Q70IA6 237 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 C2orf69Q8N8R5 385 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 CAPNS2Q96L46 248 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 CRBNQ96SW2 442 aa23.28■■□□□ 1.32
PTCD3-210ENST00000473829 WDR33Q9C0J8 1336 aaKnown RBP23.28■■□□□ 1.32
PTCD3-210ENST00000473829 UQCRFS1P1P0C7P4 283 aa23.27■■□□□ 1.32
PTCD3-210ENST00000473829 TTC39AQ5SRH9 613 aa23.27■■□□□ 1.32
PTCD3-210ENST00000473829 HHIPL1Q96JK4 782 aa23.27■■□□□ 1.32
PTCD3-210ENST00000473829 ABCF2Q9UG63 623 aa23.27■■□□□ 1.32
PTCD3-210ENST00000473829 DAGLAQ9Y4D2 1042 aa23.27■■□□□ 1.32
PTCD3-210ENST00000473829 MYO5AQ9Y4I1 1855 aaKnown RBP23.27■■□□□ 1.32
PTCD3-210ENST00000473829 CACNB3P54284 484 aa23.26■■□□□ 1.31
PTCD3-210ENST00000473829 GRM1Q13255 1194 aa23.26■■□□□ 1.31
PTCD3-210ENST00000473829 TBC1D9Q6ZT07 1266 aa23.26■■□□□ 1.31
PTCD3-210ENST00000473829 AACSQ86V21 672 aa23.26■■□□□ 1.31
PTCD3-210ENST00000473829 ZGPATQ8N5A5 531 aaKnown RBP23.26■■□□□ 1.31
PTCD3-210ENST00000473829 MAST2Q6P0Q8 1798 aa23.25■■□□□ 1.31
PTCD3-210ENST00000473829 RASA3Q14644 834 aa23.25■■□□□ 1.31
PTCD3-210ENST00000473829 CCDC158Q5M9N0 1113 aa23.25■■□□□ 1.31
PTCD3-210ENST00000473829 ZNF384Q8TF68 577 aa23.25■■□□□ 1.31
PTCD3-210ENST00000473829 KIF1BPQ96EK5 621 aa23.25■■□□□ 1.31
PTCD3-210ENST00000473829 SNRKQ9NRH2 765 aa23.25■■□□□ 1.31
PTCD3-210ENST00000473829 PPP2R3BQ9Y5P8 575 aa23.25■■□□□ 1.31
PTCD3-210ENST00000473829 TCP10L2B9ZVM9 353 aa23.24■■□□□ 1.31
PTCD3-210ENST00000473829 CDAN1Q8IWY9 1227 aa23.24■■□□□ 1.31
PTCD3-210ENST00000473829 FZD1Q9UP38 647 aa23.24■■□□□ 1.31
PTCD3-210ENST00000473829 PCDHB15Q9Y5E8 787 aa23.24■■□□□ 1.31
PTCD3-210ENST00000473829 FKBP1BP68106 108 aa23.23■■□□□ 1.31
PTCD3-210ENST00000473829 DZIP1Q86YF9 867 aaKnown RBP23.23■■□□□ 1.31
PTCD3-210ENST00000473829 ZNF512BQ96KM6 892 aaPredicted RBP23.23■■□□□ 1.31
PTCD3-210ENST00000473829 GAKO14976 1311 aa23.23■■□□□ 1.31
PTCD3-210ENST00000473829 UBE2Q2LH0YL09 131 aa23.22■■□□□ 1.31
PTCD3-210ENST00000473829 AOC2O75106 756 aa23.22■■□□□ 1.31
PTCD3-210ENST00000473829 RAB11FIP3O75154 756 aa23.22■■□□□ 1.31
PTCD3-210ENST00000473829 ECE1P42892 770 aa23.22■■□□□ 1.31
PTCD3-210ENST00000473829 MECOMQ03112 1051 aa23.22■■□□□ 1.31
PTCD3-210ENST00000473829 PRKG1Q13976 671 aa23.22■■□□□ 1.31
PTCD3-210ENST00000473829 NBPF12Q5TAG4 269 aaPredicted RBP23.22■■□□□ 1.31
PTCD3-210ENST00000473829 TEPSINQ96N21 525 aa23.22■■□□□ 1.31
PTCD3-210ENST00000473829 FAM155AB1AL88 458 aaPredicted RBP23.21■■□□□ 1.31
PTCD3-210ENST00000473829 NF2P35240 595 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 ZAP70P43403 619 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 TNFAIP1Q13829 316 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 SPTY2D1Q68D10 685 aaPredicted RBP23.21■■□□□ 1.31
PTCD3-210ENST00000473829 RGMBQ6NW40 437 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 CDC42EP5Q6NZY7 148 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 ERICH6Q7L0X2 663 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 TMEM39BQ9GZU3 492 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 OTOFQ9HC10 1997 aa23.21■■□□□ 1.31
PTCD3-210ENST00000473829 DOCK2Q92608 1830 aa23.2■■□□□ 1.3
PTCD3-210ENST00000473829 CYP2E1P05181 493 aaPredicted RBP23.2■■□□□ 1.3
PTCD3-210ENST00000473829 HSPA1AP0DMV8 641 aaKnown RBP23.2■■□□□ 1.3
PTCD3-210ENST00000473829 HSPA1BP0DMV9 641 aaKnown RBP23.2■■□□□ 1.3
PTCD3-210ENST00000473829 TTLL12Q14166 644 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 303.3 ms