RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 MAST3O60307 1309 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 CLRN2A0PK11 232 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 IFIT1P09914 478 aaKnown RBP16.98■□□□□ 0.31
CHD3-209ENST00000473376 CRKP46108 304 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 PRKG1Q13976 671 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 PUM3Q15397 648 aaKnown RBP16.98■□□□□ 0.31
CHD3-209ENST00000473376 HOOK2Q96ED9 719 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 ZDHHC15Q96MV8 337 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 HPS5Q9UPZ3 1129 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 PCDHAC2Q9Y5I4 1007 aa16.98■□□□□ 0.31
CHD3-209ENST00000473376 LAMB1P07942 1786 aa16.97■□□□□ 0.31
CHD3-209ENST00000473376 FGFR2P21802 821 aa16.97■□□□□ 0.31
CHD3-209ENST00000473376 LRRC24Q50LG9 513 aa16.97■□□□□ 0.31
CHD3-209ENST00000473376 FAM83AQ86UY5 434 aa16.97■□□□□ 0.31
CHD3-209ENST00000473376 TEPSINQ96N21 525 aa16.97■□□□□ 0.31
CHD3-209ENST00000473376 TEKT1Q969V4 418 aa16.96■□□□□ 0.31
CHD3-209ENST00000473376 TDRD3Q9H7E2 651 aaKnown RBP16.96■□□□□ 0.31
CHD3-209ENST00000473376 EYA2O00167 538 aa16.95■□□□□ 0.3
CHD3-209ENST00000473376 FRAT2O75474 233 aaPredicted RBP16.95■□□□□ 0.3
CHD3-209ENST00000473376 CIAO1O76071 339 aa16.95■□□□□ 0.3
CHD3-209ENST00000473376 MKRN3Q13064 507 aaKnown RBP16.95■□□□□ 0.3
CHD3-209ENST00000473376 HHIPL2Q6UWX4 724 aa16.95■□□□□ 0.3
CHD3-209ENST00000473376 WDR66Q8TBY9 1149 aa16.95■□□□□ 0.3
CHD3-209ENST00000473376 LPIN2Q92539 896 aa16.95■□□□□ 0.3
CHD3-209ENST00000473376 CLMNQ96JQ2 1002 aa16.95■□□□□ 0.3
CHD3-209ENST00000473376 JAG2Q9Y219 1238 aa16.95■□□□□ 0.3
CHD3-209ENST00000473376 ARAP2Q8WZ64 1704 aa16.94■□□□□ 0.3
CHD3-209ENST00000473376 RFX5P48382 616 aaPredicted RBP16.94■□□□□ 0.3
CHD3-209ENST00000473376 MAP3K9P80192 1104 aa16.94■□□□□ 0.3
CHD3-209ENST00000473376 ZCCHC17Q9NP64 241 aaKnown RBP16.94■□□□□ 0.3
CHD3-209ENST00000473376 AOX1Q06278 1338 aa16.94■□□□□ 0.3
CHD3-209ENST00000473376 IGF2BP3O00425 579 aaKnown RBP eCLIP16.93■□□□□ 0.3
CHD3-209ENST00000473376 SLC5A1P13866 664 aa16.93■□□□□ 0.3
CHD3-209ENST00000473376 INTS3Q68E01 1043 aaKnown RBP16.93■□□□□ 0.3
CHD3-209ENST00000473376 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.93■□□□□ 0.3
CHD3-209ENST00000473376 ERO1AQ96HE7 468 aa16.93■□□□□ 0.3
CHD3-209ENST00000473376 API5Q9BZZ5 524 aaKnown RBP16.93■□□□□ 0.3
CHD3-209ENST00000473376 TMOD2Q9NZR1 351 aa16.93■□□□□ 0.3
CHD3-209ENST00000473376 RPAP1Q9BWH6 1393 aaPredicted RBP16.92■□□□□ 0.3
CHD3-209ENST00000473376 CCER2I3L3R5 266 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 SEMA3EO15041 775 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 BCAMP50895 628 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 GTF2A2P52657 109 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 APOBEC3HQ6NTF7 200 aaKnown RBP16.92■□□□□ 0.3
CHD3-209ENST00000473376 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.92■□□□□ 0.3
CHD3-209ENST00000473376 ARHGAP45Q92619 1136 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 MS4A4AQ96JQ5 239 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 R3HDMLQ9H3Y0 253 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 SMC4Q9NTJ3 1288 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 FZD1Q9UP38 647 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 CSADQ9Y600 493 aa16.92■□□□□ 0.3
CHD3-209ENST00000473376 SLC34A2O95436 690 aa16.91■□□□□ 0.3
CHD3-209ENST00000473376 UBTFL1P0CB47 393 aaPredicted RBP16.91■□□□□ 0.3
CHD3-209ENST00000473376 GJA5P36382 358 aa16.91■□□□□ 0.3
CHD3-209ENST00000473376 ARHGEF6Q15052 776 aa16.91■□□□□ 0.3
CHD3-209ENST00000473376 ATG9AQ7Z3C6 839 aa16.91■□□□□ 0.3
CHD3-209ENST00000473376 OPTNQ96CV9 577 aa16.91■□□□□ 0.3
CHD3-209ENST00000473376 GNL3LQ9NVN8 582 aaKnown RBP16.91■□□□□ 0.3
CHD3-209ENST00000473376 TCP10L2B9ZVM9 353 aa16.9■□□□□ 0.3
CHD3-209ENST00000473376 CHAF1AQ13111 956 aaPredicted RBP16.9■□□□□ 0.3
CHD3-209ENST00000473376 KLHDC4Q8TBB5 520 aa16.9■□□□□ 0.3
CHD3-209ENST00000473376 PTPN18Q99952 460 aa16.9■□□□□ 0.3
CHD3-209ENST00000473376 TMEM39BQ9GZU3 492 aa16.9■□□□□ 0.3
CHD3-209ENST00000473376 SALL1Q9NSC2 1324 aa16.9■□□□□ 0.3
CHD3-209ENST00000473376 SPDYE5A6NIY4 337 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 IL15P40933 162 aaPredicted RBP16.89■□□□□ 0.29
CHD3-209ENST00000473376 SOX10P56693 466 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 CRHR2Q13324 411 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 VGLL4Q14135 290 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 GRIK5Q16478 980 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 DCAF15Q66K64 600 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 OTOP1Q7RTM1 612 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 ERO1BQ86YB8 467 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 COPRSQ9NQ92 184 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 CEP126Q9P2H0 1117 aa16.89■□□□□ 0.29
CHD3-209ENST00000473376 IQSEC3Q9UPP2 1182 aaPredicted RBP16.89■□□□□ 0.29
CHD3-209ENST00000473376 WDHD1O75717 1129 aaPredicted RBP16.88■□□□□ 0.29
CHD3-209ENST00000473376 SP3Q02447 781 aa16.88■□□□□ 0.29
CHD3-209ENST00000473376 CDCA7LQ96GN5 454 aa16.88■□□□□ 0.29
CHD3-209ENST00000473376 ELP3Q9H9T3 547 aa16.88■□□□□ 0.29
CHD3-209ENST00000473376 PDS5AQ29RF7 1337 aaKnown RBP16.88■□□□□ 0.29
CHD3-209ENST00000473376 ZGPATQ8N5A5 531 aaKnown RBP16.87■□□□□ 0.29
CHD3-209ENST00000473376 FAM151AQ8WW52 585 aa16.87■□□□□ 0.29
CHD3-209ENST00000473376 ZFYVE28Q9HCC9 887 aa16.87■□□□□ 0.29
CHD3-209ENST00000473376 DENND2AQ9ULE3 1009 aa16.87■□□□□ 0.29
CHD3-209ENST00000473376 NOB1Q9ULX3 412 aaKnown RBP16.87■□□□□ 0.29
CHD3-209ENST00000473376 TRIM17Q9Y577 477 aa16.87■□□□□ 0.29
CHD3-209ENST00000473376 CETPP11597 493 aa16.86■□□□□ 0.29
CHD3-209ENST00000473376 ATP2B3Q16720 1220 aa16.86■□□□□ 0.29
CHD3-209ENST00000473376 ARMC5Q96C12 935 aa16.86■□□□□ 0.29
CHD3-209ENST00000473376 PTPN22Q9Y2R2 807 aa16.86■□□□□ 0.29
CHD3-209ENST00000473376 TNRC18O15417 2968 aaPredicted RBP16.86■□□□□ 0.29
CHD3-209ENST00000473376 GNRH1P01148 92 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 GNAI3P08754 354 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 PPATQ06203 517 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 PPIL2Q13356 520 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 SNAPC2Q13487 334 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 MTX1Q13505 466 aa16.85■□□□□ 0.29
CHD3-209ENST00000473376 PRPF38BQ5VTL8 546 aaKnown RBP16.85■□□□□ 0.29
CHD3-209ENST00000473376 CDAN1Q8IWY9 1227 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms