RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 IFIT1P09914 478 aaKnown RBP20.83■□□□□ 0.93
USP40-212ENST00000473191 DGKZQ13574 1117 aa20.83■□□□□ 0.93
USP40-212ENST00000473191 KIF16BQ96L93 1317 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 USP2O75604 605 aaPredicted RBP20.82■□□□□ 0.92
USP40-212ENST00000473191 TBC1D8O95759 1140 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 MAP3K11Q16584 847 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 LPIN2Q92539 896 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 ARHGAP45Q92619 1136 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 FRAT1Q92837 279 aaPredicted RBP20.82■□□□□ 0.92
USP40-212ENST00000473191 CLUAP1Q96AJ1 413 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 TEPSINQ96N21 525 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 R3HDMLQ9H3Y0 253 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 PPP2R3BQ9Y5P8 575 aa20.82■□□□□ 0.92
USP40-212ENST00000473191 CIAO1O76071 339 aa20.81■□□□□ 0.92
USP40-212ENST00000473191 SLC5A1P13866 664 aa20.81■□□□□ 0.92
USP40-212ENST00000473191 ADORA1P30542 326 aa20.81■□□□□ 0.92
USP40-212ENST00000473191 HNRNPUQ00839 825 aaKnown RBP eCLIP20.81■□□□□ 0.92
USP40-212ENST00000473191 SPRYD7Q5W111 196 aa20.81■□□□□ 0.92
USP40-212ENST00000473191 TMEM39BQ9GZU3 492 aa20.81■□□□□ 0.92
USP40-212ENST00000473191 OTOFQ9HC10 1997 aa20.81■□□□□ 0.92
USP40-212ENST00000473191 MYH13Q9UKX3 1938 aa20.8■□□□□ 0.92
USP40-212ENST00000473191 CCDC85CA6NKD9 419 aa20.8■□□□□ 0.92
USP40-212ENST00000473191 GJA5P36382 358 aa20.8■□□□□ 0.92
USP40-212ENST00000473191 TM4SF4P48230 202 aa20.8■□□□□ 0.92
USP40-212ENST00000473191 PHKA1P46020 1223 aa20.79■□□□□ 0.92
USP40-212ENST00000473191 ATP2B3Q16720 1220 aa20.79■□□□□ 0.92
USP40-212ENST00000473191 APOBEC3HQ6NTF7 200 aaKnown RBP20.79■□□□□ 0.92
USP40-212ENST00000473191 TBC1D22AQ8WUA7 517 aa20.79■□□□□ 0.92
USP40-212ENST00000473191 COPRSQ9NQ92 184 aa20.79■□□□□ 0.92
USP40-212ENST00000473191 PPP1R12BO60237 982 aaPredicted RBP20.78■□□□□ 0.92
USP40-212ENST00000473191 SUPT20HL1Q3ZLR7 823 aa20.78■□□□□ 0.92
USP40-212ENST00000473191 ATF7IPQ6VMQ6 1270 aa20.78■□□□□ 0.92
USP40-212ENST00000473191 TEKT1Q969V4 418 aa20.78■□□□□ 0.92
USP40-212ENST00000473191 SLC10A4Q96EP9 437 aa20.78■□□□□ 0.92
USP40-212ENST00000473191 WNK4Q96J92 1243 aa20.78■□□□□ 0.92
USP40-212ENST00000473191 CEP126Q9P2H0 1117 aa20.78■□□□□ 0.92
USP40-212ENST00000473191 PRDX5P30044 214 aa20.77■□□□□ 0.92
USP40-212ENST00000473191 IL15P40933 162 aaPredicted RBP20.77■□□□□ 0.92
USP40-212ENST00000473191 TIMM10P62072 90 aa20.77■□□□□ 0.92
USP40-212ENST00000473191 REM2Q8IYK8 340 aaPredicted RBP20.77■□□□□ 0.92
USP40-212ENST00000473191 TMEM57Q8N5G2 664 aa20.77■□□□□ 0.92
USP40-212ENST00000473191 CNKSR2Q8WXI2 1034 aa20.77■□□□□ 0.92
USP40-212ENST00000473191 FBXO3Q9UK99 471 aa20.77■□□□□ 0.92
USP40-212ENST00000473191 SRGAP3O43295 1099 aa20.76■□□□□ 0.91
USP40-212ENST00000473191 HDLBPQ00341 1268 aaKnown RBP20.76■□□□□ 0.91
USP40-212ENST00000473191 DIXDC1Q155Q3 683 aa20.76■□□□□ 0.91
USP40-212ENST00000473191 ZDHHC15Q96MV8 337 aa20.76■□□□□ 0.91
USP40-212ENST00000473191 PNMA6EA0A0J9YXQ4 647 aa20.75■□□□□ 0.91
USP40-212ENST00000473191 TNFAIP1Q13829 316 aa20.75■□□□□ 0.91
USP40-212ENST00000473191 ZNF296Q8WUU4 475 aaPredicted RBP20.75■□□□□ 0.91
USP40-212ENST00000473191 ELP3Q9H9T3 547 aa20.75■□□□□ 0.91
USP40-212ENST00000473191 IGF2BP3O00425 579 aaKnown RBP eCLIP20.74■□□□□ 0.91
USP40-212ENST00000473191 GNAI3P08754 354 aa20.74■□□□□ 0.91
USP40-212ENST00000473191 TFCP2Q12800 502 aa20.74■□□□□ 0.91
USP40-212ENST00000473191 MTX1Q13505 466 aa20.74■□□□□ 0.91
USP40-212ENST00000473191 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.74■□□□□ 0.91
USP40-212ENST00000473191 LAMB1P07942 1786 aa20.74■□□□□ 0.91
USP40-212ENST00000473191 IPO8O15397 1037 aaKnown RBP20.73■□□□□ 0.91
USP40-212ENST00000473191 IREB2P48200 963 aaKnown RBP20.73■□□□□ 0.91
USP40-212ENST00000473191 SREBF2Q12772 1141 aa20.73■□□□□ 0.91
USP40-212ENST00000473191 CCDC102BQ68D86 513 aa20.73■□□□□ 0.91
USP40-212ENST00000473191 WDR66Q8TBY9 1149 aa20.73■□□□□ 0.91
USP40-212ENST00000473191 DAGLAQ9Y4D2 1042 aa20.73■□□□□ 0.91
USP40-212ENST00000473191 A0A1B0GUL7 405 aa20.72■□□□□ 0.91
USP40-212ENST00000473191 GPR25O00155 361 aa20.72■□□□□ 0.91
USP40-212ENST00000473191 HHIPL2Q6UWX4 724 aa20.72■□□□□ 0.91
USP40-212ENST00000473191 IFNL1Q8IU54 200 aa20.72■□□□□ 0.91
USP40-212ENST00000473191 ANKRD13AQ8IZ07 590 aa20.72■□□□□ 0.91
USP40-212ENST00000473191 MRIQ9BWK5 157 aa20.72■□□□□ 0.91
USP40-212ENST00000473191 SUGT1Q9Y2Z0 365 aa20.72■□□□□ 0.91
USP40-212ENST00000473191 ZBTB48P10074 688 aaPredicted RBP20.71■□□□□ 0.91
USP40-212ENST00000473191 RLBP1P12271 317 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 TNNI2P48788 182 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 RASGRF1Q13972 1273 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 VGLL4Q14135 290 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.71■□□□□ 0.91
USP40-212ENST00000473191 OPTNQ96CV9 577 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 PTPN18Q99952 460 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 C1orf115Q9H7X2 142 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 HDAC5Q9UQL6 1122 aa20.71■□□□□ 0.91
USP40-212ENST00000473191 MANSC4A6NHS7 340 aaPredicted RBP20.7■□□□□ 0.9
USP40-212ENST00000473191 GNAI2P04899 355 aa20.7■□□□□ 0.9
USP40-212ENST00000473191 NFIAQ12857 509 aa20.7■□□□□ 0.9
USP40-212ENST00000473191 ZKSCAN2Q63HK3 967 aa20.7■□□□□ 0.9
USP40-212ENST00000473191 CDC42EP5Q6NZY7 148 aa20.7■□□□□ 0.9
USP40-212ENST00000473191 CTU1Q7Z7A3 348 aaKnown RBP20.7■□□□□ 0.9
USP40-212ENST00000473191 XAGE2Q96GT9 111 aa20.7■□□□□ 0.9
USP40-212ENST00000473191 MAST3O60307 1309 aa20.7■□□□□ 0.9
USP40-212ENST00000473191 TCP10Q12799 353 aa20.69■□□□□ 0.9
USP40-212ENST00000473191 DENND2AQ9ULE3 1009 aa20.69■□□□□ 0.9
USP40-212ENST00000473191 LDHBP07195 334 aaKnown RBP20.68■□□□□ 0.9
USP40-212ENST00000473191 PI16Q6UXB8 463 aa20.68■□□□□ 0.9
USP40-212ENST00000473191 MIGA2Q7L4E1 593 aa20.68■□□□□ 0.9
USP40-212ENST00000473191 FAM83AQ86UY5 434 aa20.68■□□□□ 0.9
USP40-212ENST00000473191 ZFPM1Q8IX07 1006 aa20.68■□□□□ 0.9
USP40-212ENST00000473191 ZKSCAN4Q969J2 545 aaPredicted RBP20.68■□□□□ 0.9
USP40-212ENST00000473191 MS4A4AQ96JQ5 239 aa20.68■□□□□ 0.9
USP40-212ENST00000473191 CFHR5Q9BXR6 569 aa20.68■□□□□ 0.9
USP40-212ENST00000473191 GNL3LQ9NVN8 582 aaKnown RBP20.68■□□□□ 0.9
USP40-212ENST00000473191 SALL1Q9NSC2 1324 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms