RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CRKP46108 304 aa18.74■□□□□ 0.59
SDC3-203ENST00000471567 RBM5P52756 815 aaKnown RBP eCLIP18.74■□□□□ 0.59
SDC3-203ENST00000471567 SPTY2D1Q68D10 685 aaPredicted RBP18.74■□□□□ 0.59
SDC3-203ENST00000471567 USP48Q86UV5 1035 aa18.74■□□□□ 0.59
SDC3-203ENST00000471567 EXOC6Q8TAG9 804 aa18.74■□□□□ 0.59
SDC3-203ENST00000471567 LRRCC1Q9C099 1032 aa18.74■□□□□ 0.59
SDC3-203ENST00000471567 TLR7Q9NYK1 1049 aaKnown RBP18.74■□□□□ 0.59
SDC3-203ENST00000471567 MCAMP43121 646 aa18.73■□□□□ 0.59
SDC3-203ENST00000471567 HHIPL2Q6UWX4 724 aa18.73■□□□□ 0.59
SDC3-203ENST00000471567 TEKT1Q969V4 418 aa18.73■□□□□ 0.59
SDC3-203ENST00000471567 PRMT6Q96LA8 375 aaPredicted RBP18.73■□□□□ 0.59
SDC3-203ENST00000471567 TMEM88BA6NKF7 163 aa18.72■□□□□ 0.59
SDC3-203ENST00000471567 TRAF5O00463 557 aa18.72■□□□□ 0.59
SDC3-203ENST00000471567 IFIT2P09913 472 aaKnown RBP18.72■□□□□ 0.59
SDC3-203ENST00000471567 PRDX5P30044 214 aa18.72■□□□□ 0.59
SDC3-203ENST00000471567 HDAC1Q13547 482 aaPredicted RBP18.72■□□□□ 0.59
SDC3-203ENST00000471567 APOBEC3FQ8IUX4 373 aaKnown RBP18.72■□□□□ 0.59
SDC3-203ENST00000471567 ZDHHC15Q96MV8 337 aa18.72■□□□□ 0.59
SDC3-203ENST00000471567 CREBZFQ9NS37 354 aa18.72■□□□□ 0.59
SDC3-203ENST00000471567 POLR2AP24928 1970 aaKnown RBP18.72■□□□□ 0.59
SDC3-203ENST00000471567 IGSF3O75054 1194 aa18.71■□□□□ 0.59
SDC3-203ENST00000471567 ABCF2Q9UG63 623 aa18.71■□□□□ 0.59
SDC3-203ENST00000471567 PCDHAC2Q9Y5I4 1007 aa18.71■□□□□ 0.59
SDC3-203ENST00000471567 ADM5C9JUS6 153 aa18.7■□□□□ 0.58
SDC3-203ENST00000471567 FMR1Q06787 632 aaKnown RBP eCLIP18.7■□□□□ 0.58
SDC3-203ENST00000471567 PI16Q6UXB8 463 aa18.7■□□□□ 0.58
SDC3-203ENST00000471567 ERICH6Q7L0X2 663 aa18.7■□□□□ 0.58
SDC3-203ENST00000471567 SPDYE2Q495Y8 402 aa18.69■□□□□ 0.58
SDC3-203ENST00000471567 CST9Q5W186 159 aa18.69■□□□□ 0.58
SDC3-203ENST00000471567 SLF2Q8IX21 1173 aa18.69■□□□□ 0.58
SDC3-203ENST00000471567 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.69■□□□□ 0.58
SDC3-203ENST00000471567 CELF2O95319 508 aaKnown RBP18.68■□□□□ 0.58
SDC3-203ENST00000471567 APOBEC3HQ6NTF7 200 aaKnown RBP18.68■□□□□ 0.58
SDC3-203ENST00000471567 DZIP1Q86YF9 867 aaKnown RBP18.68■□□□□ 0.58
SDC3-203ENST00000471567 GCC1Q96CN9 775 aa18.68■□□□□ 0.58
SDC3-203ENST00000471567 FAM163AQ96GL9 167 aaPredicted RBP18.68■□□□□ 0.58
SDC3-203ENST00000471567 RWDD1Q9H446 243 aaPredicted RBP18.68■□□□□ 0.58
SDC3-203ENST00000471567 TDRD3Q9H7E2 651 aaKnown RBP18.68■□□□□ 0.58
SDC3-203ENST00000471567 SNRKQ9NRH2 765 aa18.68■□□□□ 0.58
SDC3-203ENST00000471567 ZNF70Q9UC06 446 aaPredicted RBP18.68■□□□□ 0.58
SDC3-203ENST00000471567 PPP2R3BQ9Y5P8 575 aa18.68■□□□□ 0.58
SDC3-203ENST00000471567 TRPM7Q96QT4 1865 aa18.68■□□□□ 0.58
SDC3-203ENST00000471567 AKAP11Q9UKA4 1901 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 CLRN2A0PK11 232 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 SMARCA5O60264 1052 aaPredicted RBP18.67■□□□□ 0.58
SDC3-203ENST00000471567 CYP2E1P05181 493 aaPredicted RBP18.67■□□□□ 0.58
SDC3-203ENST00000471567 ZAP70P43403 619 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 TNFAIP1Q13829 316 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 DIXDC1Q155Q3 683 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 TBC1D9Q6ZT07 1266 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 CDCA5Q96FF9 252 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 LRP2BPQ9P2M1 347 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 DAGLAQ9Y4D2 1042 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 AOX1Q06278 1338 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 ECM29Q5VYK3 1845 aa18.67■□□□□ 0.58
SDC3-203ENST00000471567 LDHCP07864 332 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 GSTO1P78417 241 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 HTRA3P83110 453 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 MECOMQ03112 1051 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 DLK2Q6UY11 383 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 DEFB129Q9H1M3 183 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 VEZTQ9HBM0 779 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 GAKO14976 1311 aa18.66■□□□□ 0.58
SDC3-203ENST00000471567 ATP5JP18859 108 aa18.65■□□□□ 0.58
SDC3-203ENST00000471567 FKBP1CQ5VVH2 108 aa18.65■□□□□ 0.58
SDC3-203ENST00000471567 NSUN4Q96CB9 384 aaKnown RBP18.65■□□□□ 0.58
SDC3-203ENST00000471567 BCL11AQ9H165 835 aa18.65■□□□□ 0.58
SDC3-203ENST00000471567 ZNF408Q9H9D4 720 aa18.65■□□□□ 0.58
SDC3-203ENST00000471567 TMOD2Q9NZR1 351 aa18.65■□□□□ 0.58
SDC3-203ENST00000471567 RAI14Q9P0K7 980 aa18.65■□□□□ 0.58
SDC3-203ENST00000471567 TNNI2P48788 182 aa18.64■□□□□ 0.57
SDC3-203ENST00000471567 IRX6P78412 446 aaPredicted RBP18.64■□□□□ 0.57
SDC3-203ENST00000471567 TMED8Q6PL24 325 aaPredicted RBP18.64■□□□□ 0.57
SDC3-203ENST00000471567 DNAJC5GQ8N7S2 189 aa18.64■□□□□ 0.57
SDC3-203ENST00000471567 ABT1Q9ULW3 272 aaKnown RBP18.64■□□□□ 0.57
SDC3-203ENST00000471567 SCAF8Q9UPN6 1271 aaKnown RBP18.64■□□□□ 0.57
SDC3-203ENST00000471567 TLL2Q9Y6L7 1015 aa18.64■□□□□ 0.57
SDC3-203ENST00000471567 NF2P35240 595 aa18.63■□□□□ 0.57
SDC3-203ENST00000471567 FKBP1BP68106 108 aa18.63■□□□□ 0.57
SDC3-203ENST00000471567 TTF1Q15361 905 aaPredicted RBP18.63■□□□□ 0.57
SDC3-203ENST00000471567 C2orf69Q8N8R5 385 aa18.63■□□□□ 0.57
SDC3-203ENST00000471567 ZNF384Q8TF68 577 aa18.63■□□□□ 0.57
SDC3-203ENST00000471567 GBA2Q9HCG7 927 aaPredicted RBP18.63■□□□□ 0.57
SDC3-203ENST00000471567 PIH1D3Q9NQM4 214 aaKnown RBP18.63■□□□□ 0.57
SDC3-203ENST00000471567 ZBTB47Q9UFB7 747 aaPredicted RBP18.63■□□□□ 0.57
SDC3-203ENST00000471567 MROH7-TTC4A0A0A0MT08 1334 aa18.63■□□□□ 0.57
SDC3-203ENST00000471567 GPR75-ASB3A0A0A6YYF3 556 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 RASSF10A6NK89 507 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 RASA3Q14644 834 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 CDC42EP5Q6NZY7 148 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 SAPCD2Q86UD0 394 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 FAM83AQ86UY5 434 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 SMC5Q8IY18 1101 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 GPATCH3Q96I76 525 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 HHIPL1Q96JK4 782 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 ECHDC1Q9NTX5 307 aa18.62■□□□□ 0.57
SDC3-203ENST00000471567 MYH2Q9UKX2 1941 aa18.61■□□□□ 0.57
SDC3-203ENST00000471567 TCP10L2B9ZVM9 353 aa18.61■□□□□ 0.57
SDC3-203ENST00000471567 MAP4K4O95819 1239 aaPredicted RBP18.61■□□□□ 0.57
SDC3-203ENST00000471567 DEFB115Q30KQ5 88 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms