RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MICU3Q86XE3 530 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 NUTM2AQ8IVF1 878 aaPredicted RBP22.33■■□□□ 1.16
VIM-203ENST00000469543 SPATA5Q8NB90 893 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 PIBF1Q8WXW3 757 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 TSC1Q92574 1164 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 MPHOSPH8Q99549 860 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 TRIM5Q9C035 493 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 ARMT1Q9H993 441 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 NUP98P52948 1817 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 NEDD4P46934 1319 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 UQCRHLA0A096LP55 91 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 SMIM22K7EJ46 135 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 UQCRHP07919 91 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 CDC27P30260 824 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 PUM3Q15397 648 aaKnown RBP22.32■■□□□ 1.16
VIM-203ENST00000469543 FSIP1Q8NA03 581 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 FBXO18Q8NFZ0 1043 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 FGFR2P21802 821 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 MARCH10Q8NA82 808 aaPredicted RBP22.32■■□□□ 1.16
VIM-203ENST00000469543 LPIN2Q92539 896 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 AIDAQ96BJ3 306 aa22.32■■□□□ 1.16
VIM-203ENST00000469543 STRBPQ96SI9 672 aaKnown RBP22.32■■□□□ 1.16
VIM-203ENST00000469543 ERVV-1B6SEH8 477 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 DDB1Q16531 1140 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 ENGASEQ8NFI3 743 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 KIF3AQ9Y496 699 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 TRDNQ13061 729 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 DRC7Q8IY82 874 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 FBXL16Q8N461 479 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 ZKSCAN3Q9BRR0 538 aa22.31■■□□□ 1.16
VIM-203ENST00000469543 EPB41L4AQ9HCS5 686 aaPredicted RBP22.31■■□□□ 1.16
VIM-203ENST00000469543 LRP6O75581 1613 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 NDUFA8P51970 172 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 CCDC186Q7Z3E2 898 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 TICAM2Q86XR7 235 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 MIGA1Q8NAN2 632 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 SPEF2Q9C093 1822 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 MBD4O95243 580 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 ARID4AP29374 1257 aaPredicted RBP22.3■■□□□ 1.16
VIM-203ENST00000469543 NIP7Q9Y221 180 aaKnown RBP eCLIP22.3■■□□□ 1.16
VIM-203ENST00000469543 NHSL1Q5SYE7 1610 aa22.3■■□□□ 1.16
VIM-203ENST00000469543 LOC102724428A0A0B4J2F2 783 aa22.29■■□□□ 1.16
VIM-203ENST00000469543 TPM2P07951 284 aa22.29■■□□□ 1.16
VIM-203ENST00000469543 SIK1P57059 783 aa22.29■■□□□ 1.16
VIM-203ENST00000469543 UBE3CQ15386 1083 aa22.29■■□□□ 1.16
VIM-203ENST00000469543 ZNF396Q96N95 335 aaPredicted RBP22.29■■□□□ 1.16
VIM-203ENST00000469543 ANGEL1Q9UNK9 670 aaKnown RBP22.29■■□□□ 1.16
VIM-203ENST00000469543 TTF1Q15361 905 aaPredicted RBP22.29■■□□□ 1.16
VIM-203ENST00000469543 CCDC82Q8N4S0 544 aa22.29■■□□□ 1.16
VIM-203ENST00000469543 CCDC87Q9NVE4 849 aa22.29■■□□□ 1.16
VIM-203ENST00000469543 ZSWIM5Q9P217 1185 aa22.29■■□□□ 1.16
VIM-203ENST00000469543 MARCKSP29966 332 aaPredicted RBP22.28■■□□□ 1.16
VIM-203ENST00000469543 CCDC73Q6ZRK6 1079 aa22.28■■□□□ 1.16
VIM-203ENST00000469543 CMTR1Q8N1G2 835 aaKnown RBP22.28■■□□□ 1.16
VIM-203ENST00000469543 LINC00301Q8NCQ3 95 aa22.28■■□□□ 1.16
VIM-203ENST00000469543 FAM13BQ9NYF5 915 aa22.28■■□□□ 1.16
VIM-203ENST00000469543 RRP12Q5JTH9 1297 aaKnown RBP22.28■■□□□ 1.16
VIM-203ENST00000469543 ZNF512BQ96KM6 892 aaPredicted RBP22.28■■□□□ 1.16
VIM-203ENST00000469543 UTP14AQ9BVJ6 771 aaKnown RBP22.28■■□□□ 1.16
VIM-203ENST00000469543 KINO60870 393 aaKnown RBP22.27■■□□□ 1.16
VIM-203ENST00000469543 HSP90AA2PQ14568 343 aaPredicted RBP22.27■■□□□ 1.16
VIM-203ENST00000469543 SF3A1Q15459 793 aaKnown RBP22.27■■□□□ 1.16
VIM-203ENST00000469543 ZSCAN25Q6NSZ9 544 aa22.27■■□□□ 1.16
VIM-203ENST00000469543 IFNL3Q8IZI9 196 aa22.27■■□□□ 1.16
VIM-203ENST00000469543 FAM160A1Q05DH4 1040 aa22.27■■□□□ 1.16
VIM-203ENST00000469543 IQCB1Q15051 598 aa22.27■■□□□ 1.16
VIM-203ENST00000469543 STK38Q15208 465 aa22.27■■□□□ 1.16
VIM-203ENST00000469543 C3orf67Q6ZVT6 689 aa22.27■■□□□ 1.16
VIM-203ENST00000469543 DHX16O60231 1041 aaKnown RBP22.26■■□□□ 1.15
VIM-203ENST00000469543 CAMTA2O94983 1202 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 PRKCSHP14314 528 aaPredicted RBP22.26■■□□□ 1.15
VIM-203ENST00000469543 METAP2P50579 478 aaKnown RBP eCLIP22.26■■□□□ 1.153e-11■□□□□ 11.3
VIM-203ENST00000469543 ARID5BQ14865 1188 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 MYSM1Q5VVJ2 828 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 APOA5Q6Q788 366 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 LCORLQ8N3X6 602 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 KIAA1524Q8TCG1 905 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 IGDCC4Q8TDY8 1250 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 TOMM22Q9NS69 142 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 ISM2Q6H9L7 571 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 SDF4Q9BRK5 362 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 RTEL1Q9NZ71 1219 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 MROH5Q6ZUA9 1318 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 MYH3P11055 1940 aa22.26■■□□□ 1.15
VIM-203ENST00000469543 SH2B2O14492 632 aaPredicted RBP22.25■■□□□ 1.15
VIM-203ENST00000469543 ZNF75DP51815 510 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 CCDC144BQ3MJ40 725 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 NFXL1Q6ZNB6 911 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 BICDL1Q6ZP65 573 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 PTF1AQ7RTS3 328 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 FMR1NBQ8N0W7 255 aaPredicted RBP22.25■■□□□ 1.15
VIM-203ENST00000469543 BIN1O00499 593 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 ADGRA1Q86SQ6 560 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 TDRD7Q8NHU6 1098 aaKnown RBP22.25■■□□□ 1.15
VIM-203ENST00000469543 EP400Q96L91 3159 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 MYH7P12883 1935 aa22.25■■□□□ 1.15
VIM-203ENST00000469543 SLC5A1P13866 664 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 KIF23Q02241 960 aaPredicted RBP22.24■■□□□ 1.15
VIM-203ENST00000469543 ALG1Q9BT22 464 aa22.24■■□□□ 1.15
VIM-203ENST00000469543 NAPBQ9H115 298 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms