RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 NBPF12Q5TAG4 269 aaPredicted RBP20.73■□□□□ 0.91
CCDC28B-204ENST00000469003 DZIP1LQ8IYY4 767 aaKnown RBP20.73■□□□□ 0.91
CCDC28B-204ENST00000469003 HDLBPQ00341 1268 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-204ENST00000469003 SLC10A4Q96EP9 437 aa20.72■□□□□ 0.91
CCDC28B-204ENST00000469003 TDRD3Q9H7E2 651 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-204ENST00000469003 RARSP54136 660 aaKnown RBP20.71■□□□□ 0.91
CCDC28B-204ENST00000469003 GRIK5Q16478 980 aa20.71■□□□□ 0.91
CCDC28B-204ENST00000469003 FBXO3Q9UK99 471 aa20.71■□□□□ 0.91
CCDC28B-204ENST00000469003 HDAC5Q9UQL6 1122 aa20.71■□□□□ 0.91
CCDC28B-204ENST00000469003 LAMB1P07942 1786 aa20.71■□□□□ 0.91
CCDC28B-204ENST00000469003 TBC1D8O95759 1140 aa20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 SLC5A1P13866 664 aa20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 IREB2P48200 963 aaKnown RBP20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 NOM1Q5C9Z4 860 aaKnown RBP20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 ATG9AQ7Z3C6 839 aa20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 CTU1Q7Z7A3 348 aaKnown RBP20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 LPIN2Q92539 896 aa20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 WNK4Q96J92 1243 aa20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 CLMNQ96JQ2 1002 aa20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 MYH13Q9UKX3 1938 aa20.7■□□□□ 0.9
CCDC28B-204ENST00000469003 MANSC4A6NHS7 340 aaPredicted RBP20.69■□□□□ 0.9
CCDC28B-204ENST00000469003 USP2O75604 605 aaPredicted RBP20.69■□□□□ 0.9
CCDC28B-204ENST00000469003 ZBTB48P10074 688 aaPredicted RBP20.69■□□□□ 0.9
CCDC28B-204ENST00000469003 ARHGAP45Q92619 1136 aa20.69■□□□□ 0.9
CCDC28B-204ENST00000469003 TEKT1Q969V4 418 aa20.69■□□□□ 0.9
CCDC28B-204ENST00000469003 CFHR5Q9BXR6 569 aa20.69■□□□□ 0.9
CCDC28B-204ENST00000469003 SUGT1Q9Y2Z0 365 aa20.69■□□□□ 0.9
CCDC28B-204ENST00000469003 CIAO1O76071 339 aa20.68■□□□□ 0.9
CCDC28B-204ENST00000469003 TNNI2P48788 182 aa20.68■□□□□ 0.9
CCDC28B-204ENST00000469003 INHBEP58166 350 aa20.68■□□□□ 0.9
CCDC28B-204ENST00000469003 MRIQ9BWK5 157 aa20.68■□□□□ 0.9
CCDC28B-204ENST00000469003 LRRFIP2Q9Y608 721 aaKnown RBP20.68■□□□□ 0.9
CCDC28B-204ENST00000469003 MAST3O60307 1309 aa20.68■□□□□ 0.9
CCDC28B-204ENST00000469003 OTOFQ9HC10 1997 aa20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 TCP10L2B9ZVM9 353 aa20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 GPR25O00155 361 aa20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 ALDH1A1P00352 501 aa20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 ANKRD13AQ8IZ07 590 aa20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 ZNF296Q8WUU4 475 aaPredicted RBP20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 TEPSINQ96N21 525 aa20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 SIL1Q9H173 461 aa20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.67■□□□□ 0.9
CCDC28B-204ENST00000469003 INTS3Q68E01 1043 aaKnown RBP20.66■□□□□ 0.9
CCDC28B-204ENST00000469003 ZDHHC15Q96MV8 337 aa20.66■□□□□ 0.9
CCDC28B-204ENST00000469003 MEIS3Q99687 375 aa20.66■□□□□ 0.9
CCDC28B-204ENST00000469003 CEP126Q9P2H0 1117 aa20.66■□□□□ 0.9
CCDC28B-204ENST00000469003 ATP2B3Q16720 1220 aa20.65■□□□□ 0.9
CCDC28B-204ENST00000469003 PRPF38BQ5VTL8 546 aaKnown RBP20.65■□□□□ 0.9
CCDC28B-204ENST00000469003 IFNL1Q8IU54 200 aa20.65■□□□□ 0.9
CCDC28B-204ENST00000469003 CDAN1Q8IWY9 1227 aa20.65■□□□□ 0.9
CCDC28B-204ENST00000469003 WDR66Q8TBY9 1149 aa20.65■□□□□ 0.9
CCDC28B-204ENST00000469003 TMEM39BQ9GZU3 492 aa20.65■□□□□ 0.9
CCDC28B-204ENST00000469003 IL15P40933 162 aaPredicted RBP20.64■□□□□ 0.89
CCDC28B-204ENST00000469003 HHIPL2Q6UWX4 724 aa20.64■□□□□ 0.89
CCDC28B-204ENST00000469003 COPRSQ9NQ92 184 aa20.64■□□□□ 0.89
CCDC28B-204ENST00000469003 TMOD2Q9NZR1 351 aa20.64■□□□□ 0.89
CCDC28B-204ENST00000469003 GNAI3P08754 354 aa20.63■□□□□ 0.89
CCDC28B-204ENST00000469003 GJA5P36382 358 aa20.63■□□□□ 0.89
CCDC28B-204ENST00000469003 PKN2Q16513 984 aaKnown RBP20.63■□□□□ 0.89
CCDC28B-204ENST00000469003 APOBEC3HQ6NTF7 200 aaKnown RBP20.63■□□□□ 0.89
CCDC28B-204ENST00000469003 R3HDMLQ9H3Y0 253 aa20.63■□□□□ 0.89
CCDC28B-204ENST00000469003 PA2G4Q9UQ80 394 aaKnown RBP20.63■□□□□ 0.89
CCDC28B-204ENST00000469003 FKTNO75072 461 aa20.62■□□□□ 0.89
CCDC28B-204ENST00000469003 CACNB3P54284 484 aa20.62■□□□□ 0.89
CCDC28B-204ENST00000469003 FKBP1CQ5VVH2 108 aa20.62■□□□□ 0.89
CCDC28B-204ENST00000469003 FAM83AQ86UY5 434 aa20.62■□□□□ 0.89
CCDC28B-204ENST00000469003 GNL3LQ9NVN8 582 aaKnown RBP20.62■□□□□ 0.89
CCDC28B-204ENST00000469003 IGF2BP3O00425 579 aaKnown RBP eCLIP20.61■□□□□ 0.89
CCDC28B-204ENST00000469003 IPO8O15397 1037 aaKnown RBP20.61■□□□□ 0.89
CCDC28B-204ENST00000469003 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.61■□□□□ 0.89
CCDC28B-204ENST00000469003 ELP3Q9H9T3 547 aa20.61■□□□□ 0.89
CCDC28B-204ENST00000469003 MAP3K9P80192 1104 aa20.6■□□□□ 0.89
CCDC28B-204ENST00000469003 OTUD7BQ6GQQ9 843 aa20.6■□□□□ 0.89
CCDC28B-204ENST00000469003 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.6■□□□□ 0.89
CCDC28B-204ENST00000469003 OPTNQ96CV9 577 aa20.6■□□□□ 0.89
CCDC28B-204ENST00000469003 TESPA1A2RU30 521 aaPredicted RBP20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 SEMA3EO15041 775 aa20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 ZBTB22O15209 634 aa20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 TRIM27P14373 513 aa20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 MTX1Q13505 466 aa20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 VGLL4Q14135 290 aa20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 HOOK2Q96ED9 719 aa20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 DENND2AQ9ULE3 1009 aa20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 RPAP1Q9BWH6 1393 aaPredicted RBP20.59■□□□□ 0.89
CCDC28B-204ENST00000469003 SALL1Q9NSC2 1324 aa20.58■□□□□ 0.89
CCDC28B-204ENST00000469003 PRDX5P30044 214 aa20.58■□□□□ 0.89
CCDC28B-204ENST00000469003 PHKA1P46020 1223 aa20.58■□□□□ 0.89
CCDC28B-204ENST00000469003 ATF7IPQ6VMQ6 1270 aa20.58■□□□□ 0.89
CCDC28B-204ENST00000469003 HPS5Q9UPZ3 1129 aa20.58■□□□□ 0.89
CCDC28B-204ENST00000469003 DAGLAQ9Y4D2 1042 aa20.58■□□□□ 0.89
CCDC28B-204ENST00000469003 CSADQ9Y600 493 aa20.58■□□□□ 0.89
CCDC28B-204ENST00000469003 SRGAP3O43295 1099 aa20.57■□□□□ 0.88
CCDC28B-204ENST00000469003 BCAR3O75815 825 aa20.57■□□□□ 0.88
CCDC28B-204ENST00000469003 LDHBP07195 334 aaKnown RBP20.57■□□□□ 0.88
CCDC28B-204ENST00000469003 MS4A4AQ96JQ5 239 aa20.57■□□□□ 0.88
CCDC28B-204ENST00000469003 PTPN18Q99952 460 aa20.57■□□□□ 0.88
CCDC28B-204ENST00000469003 ADORA1P30542 326 aa20.56■□□□□ 0.88
CCDC28B-204ENST00000469003 DIXDC1Q155Q3 683 aa20.56■□□□□ 0.88
CCDC28B-204ENST00000469003 CCDC102BQ68D86 513 aa20.56■□□□□ 0.88
CCDC28B-204ENST00000469003 FBXO46Q6PJ61 603 aaPredicted RBP20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms