RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 NBPF3Q9H094 633 aa9.9□□□□□ -0.82
BRCA1-208ENST00000468300 ZSWIM6Q9HCJ5 1215 aa9.9□□□□□ -0.82
BRCA1-208ENST00000468300 KCNG1Q9UIX4 513 aa9.9□□□□□ -0.82
BRCA1-208ENST00000468300 NSFL1CQ9UNZ2 370 aaKnown RBP9.9□□□□□ -0.82
BRCA1-208ENST00000468300 ATP2B4P23634 1241 aa9.9□□□□□ -0.83
BRCA1-208ENST00000468300 C2CD5Q86YS7 1000 aa9.9□□□□□ -0.83
BRCA1-208ENST00000468300 MAGEB6Q8N7X4 407 aa9.9□□□□□ -0.83
BRCA1-208ENST00000468300 NKX2-3Q8TAU0 364 aa9.9□□□□□ -0.83
BRCA1-208ENST00000468300 STRBPQ96SI9 672 aaKnown RBP9.9□□□□□ -0.83
BRCA1-208ENST00000468300 DENND2AQ9ULE3 1009 aa9.9□□□□□ -0.83
BRCA1-208ENST00000468300 TIAM2Q8IVF5 1701 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 K7ELQ4 463 aaPredicted RBP9.89□□□□□ -0.83
BRCA1-208ENST00000468300 GPAA1O43292 621 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 MCCP23508 829 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 TTLL5Q6EMB2 1281 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 TMC4Q7Z404 712 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 SALL1Q9NSC2 1324 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 UFL1O94874 794 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 KCNJ4P48050 445 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 NEK4P51957 841 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 BECN1Q14457 450 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 FAM43BQ6ZT52 329 aaPredicted RBP9.89□□□□□ -0.83
BRCA1-208ENST00000468300 SLC16A10Q8TF71 515 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 SGIP1Q9BQI5 828 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 TM6SF1Q9BZW5 370 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.89□□□□□ -0.83
BRCA1-208ENST00000468300 GGA1Q9UJY5 639 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 SCN9AQ15858 1988 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 UTRNP46939 3433 aa9.89□□□□□ -0.83
BRCA1-208ENST00000468300 ALDH1B1P30837 517 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 PRDM16Q9HAZ2 1276 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 TACC3Q9Y6A5 838 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 ADAMTSL1Q8N6G6 1762 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 WASHC4Q2M389 1173 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 NSUN4Q96CB9 384 aaKnown RBP9.88□□□□□ -0.83
BRCA1-208ENST00000468300 RIOK1Q9BRS2 568 aaKnown RBP9.88□□□□□ -0.83
BRCA1-208ENST00000468300 EPB41L4AQ9HCS5 686 aaPredicted RBP9.88□□□□□ -0.83
BRCA1-208ENST00000468300 CD209Q9NNX6 404 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 GNL3LQ9NVN8 582 aaKnown RBP9.88□□□□□ -0.83
BRCA1-208ENST00000468300 U3KPZ7 1027 aaPredicted RBP9.88□□□□□ -0.83
BRCA1-208ENST00000468300 FGAP02671 866 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 PRDX5P30044 214 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 ZSCAN25Q6NSZ9 544 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 HSCBQ8IWL3 235 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 LCORLQ8N3X6 602 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 JAG2Q9Y219 1238 aa9.88□□□□□ -0.83
BRCA1-208ENST00000468300 COL4A5P29400 1685 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 PATL2C9JE40 543 aaKnown RBP9.87□□□□□ -0.83
BRCA1-208ENST00000468300 MAP3K12Q12852 859 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 RUFY3Q7L099 469 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 DDX60LQ5H9U9 1706 aaKnown RBP9.87□□□□□ -0.83
BRCA1-208ENST00000468300 H0YIN7 160 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 CASTP20810 708 aaKnown RBP9.87□□□□□ -0.83
BRCA1-208ENST00000468300 MECOMQ03112 1051 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 LRRFIP1Q32MZ4 808 aaKnown RBP9.87□□□□□ -0.83
BRCA1-208ENST00000468300 VPS37DQ86XT2 251 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 SPRYD3Q8NCJ5 442 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 JAKMIP1Q96N16 626 aaKnown RBP9.87□□□□□ -0.83
BRCA1-208ENST00000468300 RTFDC1Q9BY42 306 aaPredicted RBP9.87□□□□□ -0.83
BRCA1-208ENST00000468300 MYH2Q9UKX2 1941 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 PSME4Q14997 1843 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 FOCADQ5VW36 1801 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 LAMB1P07942 1786 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 BAZ2AQ9UIF9 1905 aaKnown RBP9.87□□□□□ -0.83
BRCA1-208ENST00000468300 GSG1L2A8MUP6 293 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 PRKAB2O43741 272 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 AK2P54819 239 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 ST3GAL1Q11201 340 aa9.87□□□□□ -0.83
BRCA1-208ENST00000468300 ZBTB7AO95365 584 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 ZNF622Q969S3 477 aaKnown RBP eCLIP9.86□□□□□ -0.835e-8■■■□□ 17.3
BRCA1-208ENST00000468300 ALDH8A1Q9H2A2 487 aaPredicted RBP9.86□□□□□ -0.83
BRCA1-208ENST00000468300 ARMT1Q9H993 441 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 LRP2BPQ9P2M1 347 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 MBD4O95243 580 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 LARGE1O95461 756 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 PTMSP20962 102 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 CUL4AQ13619 759 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 TOB2Q14106 344 aaPredicted RBP9.86□□□□□ -0.83
BRCA1-208ENST00000468300 TMX3Q96JJ7 454 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 ABCF2Q9UG63 623 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 ZMYM6O95789 1325 aa9.86□□□□□ -0.83
BRCA1-208ENST00000468300 ST18O60284 1047 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 ALX1Q15699 326 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 ZNF804AQ7Z570 1209 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 MPNDQ8N594 471 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 MIGA1Q8NAN2 632 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 E7EWF7 191 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 RPS6KB1P23443 525 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 DYNLL1P63167 89 aaKnown RBP9.85□□□□□ -0.83
BRCA1-208ENST00000468300 EXOSC10Q01780 885 aaKnown RBP9.85□□□□□ -0.83
BRCA1-208ENST00000468300 LARP6Q9BRS8 491 aaKnown RBP9.85□□□□□ -0.83
BRCA1-208ENST00000468300 FAM205AQ6ZU69 1335 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 SMIM22K7EJ46 135 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 CYP7A1P22680 504 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 PTGER2P43116 358 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 CHAF1AQ13111 956 aaPredicted RBP9.85□□□□□ -0.83
BRCA1-208ENST00000468300 NBR1Q14596 966 aa9.85□□□□□ -0.83
BRCA1-208ENST00000468300 R3HDM1Q15032 1099 aaKnown RBP9.85□□□□□ -0.83
BRCA1-208ENST00000468300 SLKQ9H2G2 1235 aaPredicted RBP9.85□□□□□ -0.83
BRCA1-208ENST00000468300 FER1L6Q2WGJ9 1857 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms