RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ZC3H4Q9UPT8 1303 aaKnown RBP10.76□□□□□ -0.69
SYNE1-214ENST00000454018 SCN4AP35499 1836 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 SNAP23O00161 211 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 KLRK1P26718 216 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 CAVIN4Q5BKX8 364 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 LARGE2Q8N3Y3 721 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 GPR101Q96P66 508 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-214ENST00000454018 TMEM121BQ9BXQ6 578 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-214ENST00000454018 IL1RAPL2Q9NP60 686 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 PPP4R2Q9NY27 417 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-214ENST00000454018 KDM2BQ8NHM5 1336 aa10.75□□□□□ -0.69
SYNE1-214ENST00000454018 SKIV2LQ15477 1246 aaKnown RBP10.74□□□□□ -0.69
SYNE1-214ENST00000454018 CENPQQ7L2Z9 268 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-214ENST00000454018 AACSQ86V21 672 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 VPS37DQ86XT2 251 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 NIM1KQ8IY84 436 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 PROCA1Q8NCQ7 364 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-214ENST00000454018 JDP2Q8WYK2 163 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 TRAIPQ9BWF2 469 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 COA1Q9GZY4 146 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 MYH2Q9UKX2 1941 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 WTIPA6NIX2 430 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-214ENST00000454018 G3V3G9 751 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 RIMBP2O15034 1052 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 IFIT2P09913 472 aaKnown RBP10.74□□□□□ -0.69
SYNE1-214ENST00000454018 PRELPP51888 382 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 TXNRD3Q86VQ6 643 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 EAF2Q96CJ1 260 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-214ENST00000454018 XAGE2Q96GT9 111 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 NEUROD6Q96NK8 337 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 RNF181Q9P0P0 153 aa10.74□□□□□ -0.69
SYNE1-214ENST00000454018 DBNLQ9UJU6 430 aaKnown RBP10.74□□□□□ -0.69
SYNE1-214ENST00000454018 ECE2O60344 883 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 ADORA1P30542 326 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 HIBADHP31937 336 aaKnown RBP10.73□□□□□ -0.69
SYNE1-214ENST00000454018 GYG1P46976 350 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 TIMM10P62072 90 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 MDM2Q00987 491 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-214ENST00000454018 NUCB1Q02818 461 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 GORABQ5T7V8 394 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 ANKRD45Q5TZF3 282 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 PODNQ7Z5L7 613 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 FAM84BQ96KN1 310 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-214ENST00000454018 GNL3LQ9NVN8 582 aaKnown RBP10.73□□□□□ -0.69
SYNE1-214ENST00000454018 SERPINA10Q9UK55 444 aa10.73□□□□□ -0.69
SYNE1-214ENST00000454018 COL1A1P02452 1464 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-214ENST00000454018 WDR90Q96KV7 1748 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 SMARCA5O60264 1052 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-214ENST00000454018 IL1R1P14778 569 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 CLCN1P35523 988 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 C9orf131Q5VYM1 1079 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 CCDC102BQ68D86 513 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 FBXO33Q7Z6M2 555 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 CCDC97Q96F63 343 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-214ENST00000454018 GPATCH3Q96I76 525 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 PHOX2BQ99453 314 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 DBNDD2Q9BQY9 259 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 DBNDD1Q9H9R9 158 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 CD209Q9NNX6 404 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 TLR7Q9NYK1 1049 aaKnown RBP10.72□□□□□ -0.69
SYNE1-214ENST00000454018 ZNRF3Q9ULT6 936 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 BOLA1Q9Y3E2 137 aa10.72□□□□□ -0.69
SYNE1-214ENST00000454018 PDS5AQ29RF7 1337 aaKnown RBP10.72□□□□□ -0.69
SYNE1-214ENST00000454018 FZD9O00144 591 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 ARID4AP29374 1257 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-214ENST00000454018 PHKA1P46020 1223 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 BCAMP50895 628 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 CCDC158Q5M9N0 1113 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 B4GALNT3Q6L9W6 998 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 CHD1LQ86WJ1 897 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 KCTD17Q8N5Z5 321 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 CCDC8Q9H0W5 538 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-214ENST00000454018 GPCPD1Q9NPB8 672 aa10.71□□□□□ -0.69
SYNE1-214ENST00000454018 ADAMTSL1Q8N6G6 1762 aa10.71□□□□□ -0.7
SYNE1-214ENST00000454018 YDJCA8MPS7 323 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 RAD21O60216 631 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 EVI5O60447 810 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 UQCRFS1P1P0C7P4 283 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 SSTR3P32745 418 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-214ENST00000454018 EIF6P56537 245 aaKnown RBP10.7□□□□□ -0.7
SYNE1-214ENST00000454018 DOK7Q18PE1 504 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 TTC39AQ5SRH9 613 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 TDRD7Q8NHU6 1098 aaKnown RBP10.7□□□□□ -0.7
SYNE1-214ENST00000454018 ZNF512BQ96KM6 892 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-214ENST00000454018 LNPKQ9C0E8 428 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 CDHR5Q9HBB8 845 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 TTC41PQ6P2S7 1318 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 CDK5RAP2Q96SN8 1893 aa10.7□□□□□ -0.7
SYNE1-214ENST00000454018 FRAT2O75474 233 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-214ENST00000454018 MX1P20591 662 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 RASGRF1Q13972 1273 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.69□□□□□ -0.7
SYNE1-214ENST00000454018 BCL11AQ9H165 835 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 NPDC1Q9NQX5 325 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-214ENST00000454018 POLR3EQ9NVU0 708 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 DENND2AQ9ULE3 1009 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 AOX1Q06278 1338 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 FAM205AQ6ZU69 1335 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 MYO3BQ8WXR4 1341 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms