RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SNAP23O00161 211 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 HAX1O00165 279 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 PTPN12Q05209 780 aaKnown RBP8.85□□□□□ -0.99
VPS41-208ENST00000448833 SPRYD7Q5W111 196 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 MOB2Q70IA6 237 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 FBXO33Q7Z6M2 555 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 ANKRD13AQ8IZ07 590 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 SSH1Q8WYL5 1049 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 KAZALD1Q96I82 304 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 USP44Q9H0E7 712 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 VEZTQ9HBM0 779 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 SCAF8Q9UPN6 1271 aaKnown RBP8.85□□□□□ -0.99
VPS41-208ENST00000448833 AK9Q5TCS8 1911 aa8.85□□□□□ -0.99
VPS41-208ENST00000448833 CCER2I3L3R5 266 aa8.84□□□□□ -0.99
VPS41-208ENST00000448833 WDHD1O75717 1129 aaPredicted RBP8.84□□□□□ -0.99
VPS41-208ENST00000448833 GYG1P46976 350 aa8.84□□□□□ -0.99
VPS41-208ENST00000448833 PRKG1Q13976 671 aa8.84□□□□□ -0.99
VPS41-208ENST00000448833 RASA3Q14644 834 aa8.84□□□□□ -0.99
VPS41-208ENST00000448833 PUM3Q15397 648 aaKnown RBP8.84□□□□□ -0.99
VPS41-208ENST00000448833 TEKT1Q969V4 418 aa8.84□□□□□ -0.99
VPS41-208ENST00000448833 API5Q9BZZ5 524 aaKnown RBP8.84□□□□□ -0.99
VPS41-208ENST00000448833 SMC4Q9NTJ3 1288 aa8.84□□□□□ -0.99
VPS41-208ENST00000448833 GNL3LQ9NVN8 582 aaKnown RBP8.84□□□□□ -0.99
VPS41-208ENST00000448833 TMOD2Q9NZR1 351 aa8.84□□□□□ -0.99
VPS41-208ENST00000448833 CLRN2A0PK11 232 aa8.83□□□□□ -1
VPS41-208ENST00000448833 GPR25O00155 361 aa8.83□□□□□ -1
VPS41-208ENST00000448833 FKTNO75072 461 aa8.83□□□□□ -1
VPS41-208ENST00000448833 UBTFL1P0CB47 393 aaPredicted RBP8.83□□□□□ -1
VPS41-208ENST00000448833 SLC5A1P13866 664 aa8.83□□□□□ -1
VPS41-208ENST00000448833 CRKP46108 304 aa8.83□□□□□ -1
VPS41-208ENST00000448833 ARHGEF6Q15052 776 aa8.83□□□□□ -1
VPS41-208ENST00000448833 SPDYE2Q495Y8 402 aa8.83□□□□□ -1
VPS41-208ENST00000448833 FKBP1CQ5VVH2 108 aa8.83□□□□□ -1
VPS41-208ENST00000448833 DZIP1LQ8IYY4 767 aaKnown RBP8.83□□□□□ -1
VPS41-208ENST00000448833 TRMT2AQ8IZ69 625 aaKnown RBP8.83□□□□□ -1
VPS41-208ENST00000448833 WDR66Q8TBY9 1149 aa8.83□□□□□ -1
VPS41-208ENST00000448833 LPIN2Q92539 896 aa8.83□□□□□ -1
VPS41-208ENST00000448833 PUS3Q9BZE2 481 aaKnown RBP8.83□□□□□ -1
VPS41-208ENST00000448833 ZNF70Q9UC06 446 aaPredicted RBP8.83□□□□□ -1
VPS41-208ENST00000448833 EYA2O00167 538 aa8.82□□□□□ -1
VPS41-208ENST00000448833 IPO8O15397 1037 aaKnown RBP8.82□□□□□ -1
VPS41-208ENST00000448833 USP2O75604 605 aaPredicted RBP8.82□□□□□ -1
VPS41-208ENST00000448833 CIAO1O76071 339 aa8.82□□□□□ -1
VPS41-208ENST00000448833 TBC1D8O95759 1140 aa8.82□□□□□ -1
VPS41-208ENST00000448833 LRRC24Q50LG9 513 aa8.82□□□□□ -1
VPS41-208ENST00000448833 NBPF12Q5TAG4 269 aaPredicted RBP8.82□□□□□ -1
VPS41-208ENST00000448833 HHIPL2Q6UWX4 724 aa8.82□□□□□ -1
VPS41-208ENST00000448833 FAM83AQ86UY5 434 aa8.82□□□□□ -1
VPS41-208ENST00000448833 IFNL1Q8IU54 200 aa8.82□□□□□ -1
VPS41-208ENST00000448833 ANKRD44Q8N8A2 993 aa8.82□□□□□ -1
VPS41-208ENST00000448833 VGLL2Q8N8G2 317 aa8.82□□□□□ -1
VPS41-208ENST00000448833 ZNF296Q8WUU4 475 aaPredicted RBP8.82□□□□□ -1
VPS41-208ENST00000448833 ARHGAP45Q92619 1136 aa8.82□□□□□ -1
VPS41-208ENST00000448833 WNK4Q96J92 1243 aa8.82□□□□□ -1
VPS41-208ENST00000448833 ZDHHC15Q96MV8 337 aa8.82□□□□□ -1
VPS41-208ENST00000448833 TDRD3Q9H7E2 651 aaKnown RBP8.82□□□□□ -1
VPS41-208ENST00000448833 CEP126Q9P2H0 1117 aa8.82□□□□□ -1
VPS41-208ENST00000448833 CSADQ9Y600 493 aa8.82□□□□□ -1
VPS41-208ENST00000448833 SEMA3EO15041 775 aa8.81□□□□□ -1
VPS41-208ENST00000448833 GNAI3P08754 354 aa8.81□□□□□ -1
VPS41-208ENST00000448833 MKRN3Q13064 507 aaKnown RBP8.81□□□□□ -1
VPS41-208ENST00000448833 CHAF1AQ13111 956 aaPredicted RBP8.81□□□□□ -1
VPS41-208ENST00000448833 DCAF15Q66K64 600 aa8.81□□□□□ -1
VPS41-208ENST00000448833 FBXO46Q6PJ61 603 aaPredicted RBP8.81□□□□□ -1
VPS41-208ENST00000448833 ZGPATQ8N5A5 531 aaKnown RBP8.81□□□□□ -1
VPS41-208ENST00000448833 PLSCR2Q9NRY7 297 aa8.81□□□□□ -1
VPS41-208ENST00000448833 JAG2Q9Y219 1238 aa8.81□□□□□ -1
VPS41-208ENST00000448833 TNRC18O15417 2968 aaPredicted RBP8.81□□□□□ -1
VPS41-208ENST00000448833 TESPA1A2RU30 521 aaPredicted RBP8.8□□□□□ -1
VPS41-208ENST00000448833 TCP10L2B9ZVM9 353 aa8.8□□□□□ -1
VPS41-208ENST00000448833 FGFR2P21802 821 aa8.8□□□□□ -1
VPS41-208ENST00000448833 IL15P40933 162 aaPredicted RBP8.8□□□□□ -1
VPS41-208ENST00000448833 BCAMP50895 628 aa8.8□□□□□ -1
VPS41-208ENST00000448833 GTF2A2P52657 109 aa8.8□□□□□ -1
VPS41-208ENST00000448833 MAP3K9P80192 1104 aa8.8□□□□□ -1
VPS41-208ENST00000448833 INTS3Q68E01 1043 aaKnown RBP8.8□□□□□ -1
VPS41-208ENST00000448833 SLF2Q8IX21 1173 aa8.8□□□□□ -1
VPS41-208ENST00000448833 ERO1AQ96HE7 468 aa8.8□□□□□ -1
VPS41-208ENST00000448833 NOB1Q9ULX3 412 aaKnown RBP8.8□□□□□ -1
VPS41-208ENST00000448833 ATP2B3Q16720 1220 aa8.79□□□□□ -1
VPS41-208ENST00000448833 KLHDC4Q8TBB5 520 aa8.79□□□□□ -1
VPS41-208ENST00000448833 OPTNQ96CV9 577 aa8.79□□□□□ -1
VPS41-208ENST00000448833 CDCA7LQ96GN5 454 aa8.79□□□□□ -1
VPS41-208ENST00000448833 CLMNQ96JQ2 1002 aa8.79□□□□□ -1
VPS41-208ENST00000448833 TEPSINQ96N21 525 aa8.79□□□□□ -1
VPS41-208ENST00000448833 ZCCHC17Q9NP64 241 aaKnown RBP8.79□□□□□ -1
VPS41-208ENST00000448833 DENND2AQ9ULE3 1009 aa8.79□□□□□ -1
VPS41-208ENST00000448833 IQSEC3Q9UPP2 1182 aaPredicted RBP8.79□□□□□ -1
VPS41-208ENST00000448833 HPS5Q9UPZ3 1129 aa8.79□□□□□ -1
VPS41-208ENST00000448833 AKAP2Q9Y2D5 859 aa8.79□□□□□ -1
VPS41-208ENST00000448833 PCDHAC2Q9Y5I4 1007 aa8.79□□□□□ -1
VPS41-208ENST00000448833 MYH2Q9UKX2 1941 aa8.79□□□□□ -1
VPS41-208ENST00000448833 OTOFQ9HC10 1997 aa8.79□□□□□ -1
VPS41-208ENST00000448833 LDHBP07195 334 aaKnown RBP8.78□□□□□ -1
VPS41-208ENST00000448833 RFX5P48382 616 aaPredicted RBP8.78□□□□□ -1
VPS41-208ENST00000448833 SPTY2D1Q68D10 685 aaPredicted RBP8.78□□□□□ -1
VPS41-208ENST00000448833 ATG9AQ7Z3C6 839 aa8.78□□□□□ -1
VPS41-208ENST00000448833 TMEM39BQ9GZU3 492 aa8.78□□□□□ -1
VPS41-208ENST00000448833 ZFYVE28Q9HCC9 887 aa8.78□□□□□ -1
VPS41-208ENST00000448833 COPRSQ9NQ92 184 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms