RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 FBXO33Q7Z6M2 555 aa17.19■□□□□ 0.34
PDLIM2-213ENST00000448520 ANKRD13AQ8IZ07 590 aa17.19■□□□□ 0.34
PDLIM2-213ENST00000448520 ZNF70Q9UC06 446 aaPredicted RBP17.19■□□□□ 0.34
PDLIM2-213ENST00000448520 FZD1Q9UP38 647 aa17.19■□□□□ 0.34
PDLIM2-213ENST00000448520 PTPRCP08575 1304 aa17.19■□□□□ 0.34
PDLIM2-213ENST00000448520 HDLBPQ00341 1268 aaKnown RBP17.18■□□□□ 0.34
PDLIM2-213ENST00000448520 CAVIN4Q5BKX8 364 aa17.18■□□□□ 0.34
PDLIM2-213ENST00000448520 DZIP1LQ8IYY4 767 aaKnown RBP17.18■□□□□ 0.34
PDLIM2-213ENST00000448520 TBC1D22AQ8WUA7 517 aa17.18■□□□□ 0.34
PDLIM2-213ENST00000448520 MRIQ9BWK5 157 aa17.18■□□□□ 0.34
PDLIM2-213ENST00000448520 BICC1Q9H694 974 aaKnown RBP17.18■□□□□ 0.34
PDLIM2-213ENST00000448520 KIF16BQ96L93 1317 aa17.18■□□□□ 0.34
PDLIM2-213ENST00000448520 SLC34A2O95436 690 aa17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 TNNI2P48788 182 aa17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 RRP1P56182 461 aaKnown RBP17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 METTL24Q5JXM2 366 aa17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 CLUAP1Q96AJ1 413 aa17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 CLMNQ96JQ2 1002 aa17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 R3HDMLQ9H3Y0 253 aa17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 TDRD3Q9H7E2 651 aaKnown RBP17.17■□□□□ 0.34
PDLIM2-213ENST00000448520 FRAT2O75474 233 aaPredicted RBP17.16■□□□□ 0.34
PDLIM2-213ENST00000448520 PDE8BO95263 885 aa17.16■□□□□ 0.34
PDLIM2-213ENST00000448520 TRIM27P14373 513 aa17.16■□□□□ 0.34
PDLIM2-213ENST00000448520 CRKP46108 304 aa17.16■□□□□ 0.34
PDLIM2-213ENST00000448520 C20orf194Q5TEA3 1177 aa17.16■□□□□ 0.34
PDLIM2-213ENST00000448520 ZKSCAN2Q63HK3 967 aa17.16■□□□□ 0.34
PDLIM2-213ENST00000448520 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.16■□□□□ 0.34
PDLIM2-213ENST00000448520 TESPA1A2RU30 521 aaPredicted RBP17.15■□□□□ 0.34
PDLIM2-213ENST00000448520 RLBP1P12271 317 aa17.15■□□□□ 0.34
PDLIM2-213ENST00000448520 LRRC24Q50LG9 513 aa17.15■□□□□ 0.34
PDLIM2-213ENST00000448520 SUGT1Q9Y2Z0 365 aa17.15■□□□□ 0.34
PDLIM2-213ENST00000448520 AOX1Q06278 1338 aa17.15■□□□□ 0.34
PDLIM2-213ENST00000448520 SSC5DA1L4H1 1573 aa17.15■□□□□ 0.34
PDLIM2-213ENST00000448520 IGF2BP3O00425 579 aaKnown RBP eCLIP17.14■□□□□ 0.33
PDLIM2-213ENST00000448520 IRX6P78412 446 aaPredicted RBP17.14■□□□□ 0.33
PDLIM2-213ENST00000448520 ATF7IPQ6VMQ6 1270 aa17.14■□□□□ 0.33
PDLIM2-213ENST00000448520 ANKRD44Q8N8A2 993 aa17.14■□□□□ 0.33
PDLIM2-213ENST00000448520 PANK1Q8TE04 598 aa17.14■□□□□ 0.33
PDLIM2-213ENST00000448520 USP44Q9H0E7 712 aa17.14■□□□□ 0.33
PDLIM2-213ENST00000448520 IFIT1P09914 478 aaKnown RBP17.13■□□□□ 0.33
PDLIM2-213ENST00000448520 MAP3K9P80192 1104 aa17.13■□□□□ 0.33
PDLIM2-213ENST00000448520 VGLL2Q8N8G2 317 aa17.13■□□□□ 0.33
PDLIM2-213ENST00000448520 TEKT1Q969V4 418 aa17.13■□□□□ 0.33
PDLIM2-213ENST00000448520 ERO1AQ96HE7 468 aa17.13■□□□□ 0.33
PDLIM2-213ENST00000448520 TEPSINQ96N21 525 aa17.13■□□□□ 0.33
PDLIM2-213ENST00000448520 TCP10L2B9ZVM9 353 aa17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 IPO8O15397 1037 aaKnown RBP17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 GJA5P36382 358 aa17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 CHAF1AQ13111 956 aaPredicted RBP17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 INTS3Q68E01 1043 aaKnown RBP17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 OPTNQ96CV9 577 aa17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 API5Q9BZZ5 524 aaKnown RBP17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 IQSEC3Q9UPP2 1182 aaPredicted RBP17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 TRIM17Q9Y577 477 aa17.12■□□□□ 0.33
PDLIM2-213ENST00000448520 BCAMP50895 628 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 PUM3Q15397 648 aaKnown RBP17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 FKBP1CQ5VVH2 108 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 OTOP1Q7RTM1 612 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 ARHGAP45Q92619 1136 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 HOOK2Q96ED9 719 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 ZDHHC15Q96MV8 337 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 TMEM39BQ9GZU3 492 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 ELP3Q9H9T3 547 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 TMOD2Q9NZR1 351 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 CSADQ9Y600 493 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 MAST3O60307 1309 aa17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 TNRC18O15417 2968 aaPredicted RBP17.11■□□□□ 0.33
PDLIM2-213ENST00000448520 LAMB1P07942 1786 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 FGFR2P21802 821 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 GTF2A2P52657 109 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 SP3Q02447 781 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 CRHR2Q13324 411 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 ARHGEF6Q15052 776 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 FAM83AQ86UY5 434 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 TMEM57Q8N5G2 664 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 MS4A4AQ96JQ5 239 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 PTPN18Q99952 460 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 HDAC5Q9UQL6 1122 aa17.1■□□□□ 0.33
PDLIM2-213ENST00000448520 KIAA0100Q14667 2235 aaKnown RBP17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 EYA2O00167 538 aa17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 GRIK5Q16478 980 aa17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 HHIPL2Q6UWX4 724 aa17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.09■□□□□ 0.339e-7■□□□□ 8.4
PDLIM2-213ENST00000448520 KLHDC4Q8TBB5 520 aa17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 WDR66Q8TBY9 1149 aa17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 FBXO3Q9UK99 471 aa17.09■□□□□ 0.33
PDLIM2-213ENST00000448520 WDHD1O75717 1129 aaPredicted RBP17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 SLC5A1P13866 664 aa17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 VGLL4Q14135 290 aa17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 PRPF38BQ5VTL8 546 aaKnown RBP17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 FTSJ3Q8IY81 847 aaKnown RBP17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 LPIN2Q92539 896 aa17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 EFCC1Q9HA90 598 aa17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 ZFYVE28Q9HCC9 887 aa17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 PTPN22Q9Y2R2 807 aa17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 COG6Q9Y2V7 657 aa17.08■□□□□ 0.32
PDLIM2-213ENST00000448520 RFX5P48382 616 aaPredicted RBP17.07■□□□□ 0.32
PDLIM2-213ENST00000448520 APOBEC3HQ6NTF7 200 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms