RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 ZNF853P0CG23 659 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 CCL5P13501 91 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 IL1R1P14778 569 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 GJA8P48165 433 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 FKBP1AP62942 108 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 TNFAIP1Q13829 316 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 KSR2Q6VAB6 950 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 C15orf52Q6ZUT6 534 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 PI4KAP1Q8N8J0 262 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 HELBQ8NG08 1087 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 RUNDC1Q96C34 613 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 TMEM39BQ9GZU3 492 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 TDRD3Q9H7E2 651 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 SRRDQ9UH36 339 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 CSADQ9Y600 493 aa9.99□□□□□ -0.81
LIMCH1-204ENST00000446625 SPDYE5A6NIY4 337 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 NEURL1BA8MQ27 555 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 TCP10L2B9ZVM9 353 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 CETPP11597 493 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 GRK4P32298 578 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 PSMC4P43686 418 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 C17orf99Q6UX52 265 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 C8orf58Q8NAV2 365 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 TRIM47Q96LD4 638 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 PLA2G12BQ9BX93 195 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 RNF208Q9H0X6 261 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 ZCCHC17Q9NP64 241 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 CPA4Q9UI42 421 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 RIPOR2Q9Y4F9 1068 aa9.98□□□□□ -0.81
LIMCH1-204ENST00000446625 IRF6O14896 467 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 FARP2O94887 1054 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 CSF1RP07333 972 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 OSBPP22059 807 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 NEXNQ0ZGT2 675 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 ZNF804AQ7Z570 1209 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 RAET1EQ8TD07 263 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 U2AF1L4Q8WU68 220 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 STAP2Q9UGK3 403 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 TTF2Q9UNY4 1162 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 SNCAIPQ9Y6H5 919 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 AK9Q5TCS8 1911 aa9.97□□□□□ -0.81
LIMCH1-204ENST00000446625 EVI5O60447 810 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 FMNL1O95466 1100 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 HOXD10P28358 340 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 SNAPC2Q13487 334 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 CCDC30Q5VVM6 783 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 ERO1BQ86YB8 467 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 DZIP1LQ8IYY4 767 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 ZKSCAN4Q969J2 545 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 UNC93B1Q9H1C4 597 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 IFT57Q9NWB7 429 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 BIN2Q9UBW5 565 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 SERPINA10Q9UK55 444 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 FAM205AQ6ZU69 1335 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 MYPNQ86TC9 1320 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 UNC80Q8N2C7 3258 aa9.96□□□□□ -0.82
LIMCH1-204ENST00000446625 ANKRD18BA2A2Z9 1011 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 SGPL1O95470 568 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 CASP7P55210 303 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 GNAI1P63096 354 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 PPIL2Q13356 520 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 GCKRQ14397 625 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 MFSD14BQ5SR56 506 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 ADGRA2Q96PE1 1338 aa9.95□□□□□ -0.82
LIMCH1-204ENST00000446625 CRKP46108 304 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 TNNI2P48788 182 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 CACNB3P54284 484 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 UBXN2AP68543 259 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 PRKCZQ05513 592 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 RALBP1Q15311 655 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 Q7L0L9 218 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 G2E3Q7L622 706 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 DEFB123Q8N688 67 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 TSPYL6Q8N831 410 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 WRNIP1Q96S55 665 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 ADAMTS8Q9UP79 889 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 TTC28Q96AY4 2481 aa9.94□□□□□ -0.82
LIMCH1-204ENST00000446625 PDHXO00330 501 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 PLIN1O60240 522 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 GRIK5Q16478 980 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 GPR153Q6NV75 609 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 ANKRD23Q86SG2 305 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 TDRD7Q8NHU6 1098 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 GDF15Q99988 308 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 COL25A1Q9BXS0 654 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 STXBP5LQ9Y2K9 1186 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 CACNA1FO60840 1977 aa9.93□□□□□ -0.82
LIMCH1-204ENST00000446625 TFRCP02786 760 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 GYG1P46976 350 aa9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 PPATQ06203 517 aa9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 IFIT5Q13325 482 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 WDR43Q15061 677 aaKnown RBP eCLIP9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 SLAIN1Q8ND83 568 aa9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 DEFB118Q96PH6 123 aa9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 CHMP4AQ9BY43 222 aa9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 GABRQQ9UN88 632 aa9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 CHMP3Q9Y3E7 222 aa9.92□□□□□ -0.82
LIMCH1-204ENST00000446625 ADCY3O60266 1144 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms