RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 CASQ1P31415 396 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 STX17P56962 302 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 CMTR1Q8N1G2 835 aaKnown RBP13.67□□□□□ -0.22
MSH6-204ENST00000445503 APPBP2Q92624 585 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 ZSCAN12O43309 604 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 NLRP12P59046 1061 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 IL17RAQ96F46 866 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 CCDC66A2RUB6 948 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 TSGA10IPQ3SY00 556 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 NACAP1Q9BZK3 213 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 PUS7LQ9H0K6 701 aaKnown RBP13.67□□□□□ -0.22
MSH6-204ENST00000445503 RTEL1Q9NZ71 1219 aa13.67□□□□□ -0.22
MSH6-204ENST00000445503 MYL5Q02045 173 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 BMS1Q14692 1282 aaKnown RBP13.66□□□□□ -0.22
MSH6-204ENST00000445503 USPL1Q5W0Q7 1092 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 TRMT44Q8IYL2 757 aaKnown RBP13.66□□□□□ -0.22
MSH6-204ENST00000445503 SMARCC2Q8TAQ2 1214 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 CARD6Q9BX69 1037 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 PEAK1Q9H792 1746 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 ZNF827Q17R98 1081 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 NOL10Q9BSC4 688 aaKnown RBP13.66□□□□□ -0.22
MSH6-204ENST00000445503 STARD3NLO95772 234 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 SKIDA1Q1XH10 827 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 DHX40Q8IX18 779 aaKnown RBP13.66□□□□□ -0.22
MSH6-204ENST00000445503 CCDC191Q8NCU4 936 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 ANGEL1Q9UNK9 670 aaKnown RBP13.66□□□□□ -0.22
MSH6-204ENST00000445503 KCNJ14Q9UNX9 436 aa13.66□□□□□ -0.22
MSH6-204ENST00000445503 DIP2AQ14689 1571 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 SMARCE1Q969G3 411 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 DIP2BQ9P265 1576 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 YEATS4O95619 227 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 ZSCAN20P17040 1043 aaPredicted RBP13.65□□□□□ -0.22
MSH6-204ENST00000445503 RFX5P48382 616 aaPredicted RBP13.65□□□□□ -0.22
MSH6-204ENST00000445503 CTDSPL2Q05D32 466 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 MIGA1Q8NAN2 632 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 PCMTD1Q96MG8 357 aaPredicted RBP13.65□□□□□ -0.22
MSH6-204ENST00000445503 C19orf44Q9H6X5 657 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 ANKARQ7Z5J8 1434 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 INCENPQ9NQS7 918 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 RAI14Q9P0K7 980 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 KCNH3Q9ULD8 1083 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 SH3TC1Q8TE82 1336 aa13.65□□□□□ -0.22
MSH6-204ENST00000445503 C3P01024 1663 aa13.65□□□□□ -0.23
MSH6-204ENST00000445503 CDC25BP30305 580 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 SYNE4Q8N205 404 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 FANCLQ9NW38 375 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 XBP1P17861 261 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 MAP3K12Q12852 859 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 FILIP1LQ4L180 1135 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 MFSD6Q6ZSS7 791 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 FMR1NBQ8N0W7 255 aaPredicted RBP13.64□□□□□ -0.23
MSH6-204ENST00000445503 CCDC12Q8WUD4 166 aaPredicted RBP13.64□□□□□ -0.23
MSH6-204ENST00000445503 PPP1R13BQ96KQ4 1090 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 hCG_1642624A0A1W2PR95 340 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 TULP1O00294 542 aaPredicted RBP13.64□□□□□ -0.23
MSH6-204ENST00000445503 ITGA6P23229 1130 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 ALDH8A1Q9H2A2 487 aaPredicted RBP13.64□□□□□ -0.23
MSH6-204ENST00000445503 LZTFL1Q9NQ48 299 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 DACH1Q9UI36 760 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.64□□□□□ -0.23
MSH6-204ENST00000445503 TNNT3P45378 269 aaPredicted RBP13.64□□□□□ -0.23
MSH6-204ENST00000445503 SCARF1Q14162 830 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 SLC4A8Q2Y0W8 1093 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 FBXO38Q6PIJ6 1188 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 MAGEB6Q8N7X4 407 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 DHX58Q96C10 678 aa13.64□□□□□ -0.23
MSH6-204ENST00000445503 RIMBP3CA6NJZ7 1639 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 RIMBP3BA6NNM3 1639 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 RIMBP3Q9UFD9 1639 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 POLR2DO15514 142 aaKnown RBP13.63□□□□□ -0.23
MSH6-204ENST00000445503 RANBP6O60518 1105 aaKnown RBP13.63□□□□□ -0.23
MSH6-204ENST00000445503 ADKP55263 362 aaKnown RBP13.63□□□□□ -0.23
MSH6-204ENST00000445503 DHX8Q14562 1220 aaKnown RBP13.63□□□□□ -0.23
MSH6-204ENST00000445503 TSR1Q2NL82 804 aaKnown RBP13.63□□□□□ -0.23
MSH6-204ENST00000445503 SARM1Q6SZW1 724 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 IMPACTQ9P2X3 320 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 ATG9AQ7Z3C6 839 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 DNAJC10Q8IXB1 793 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 WASF1Q92558 559 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 PXDNQ92626 1479 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 ZNF532Q9HCE3 1301 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 NBPF26B4DH59 902 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 MBD4O95243 580 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 EXOSC10Q01780 885 aaKnown RBP13.63□□□□□ -0.23
MSH6-204ENST00000445503 GPS2Q13227 327 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 KIF4BQ2VIQ3 1234 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 NBPF14Q5TI25 921 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 NBPF10Q6P3W6 841 aaKnown RBP13.63□□□□□ -0.23
MSH6-204ENST00000445503 NBPF15Q8N660 670 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 ANKRD20A12PQ8NF67 263 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 ANKRD7Q92527 254 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 ARMT1Q9H993 441 aa13.63□□□□□ -0.23
MSH6-204ENST00000445503 NPHP4O75161 1426 aaPredicted RBP13.62□□□□□ -0.23
MSH6-204ENST00000445503 H7C1W4 665 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 RTN1Q16799 776 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 ZFP91Q96JP5 570 aaPredicted RBP13.62□□□□□ -0.23
MSH6-204ENST00000445503 MON2Q7Z3U7 1717 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 FDPSP14324 419 aaKnown RBP13.62□□□□□ -0.23
MSH6-204ENST00000445503 CMA1P23946 247 aa13.62□□□□□ -0.23
MSH6-204ENST00000445503 EVCP57679 992 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms