RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZSCAN25Q6NSZ9 544 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 DPF2Q92785 391 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 FSD1Q9BTV5 496 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.12■□□□□ 0.65
USP40-206ENST00000443711 TTF2Q9UNY4 1162 aaKnown RBP19.12■□□□□ 0.65
USP40-206ENST00000443711 F8W031 263 aaPredicted RBP19.11■□□□□ 0.65
USP40-206ENST00000443711 SDSP20132 328 aa19.11■□□□□ 0.65
USP40-206ENST00000443711 TMED8Q6PL24 325 aaPredicted RBP19.11■□□□□ 0.65
USP40-206ENST00000443711 TICAM2Q86XR7 235 aa19.11■□□□□ 0.65
USP40-206ENST00000443711 DZIP1Q86YF9 867 aaKnown RBP19.11■□□□□ 0.65
USP40-206ENST00000443711 KIAA0825Q8IV33 1275 aa19.11■□□□□ 0.65
USP40-206ENST00000443711 OGFOD1Q8N543 542 aa19.11■□□□□ 0.65
USP40-206ENST00000443711 HDAC9Q9UKV0 1011 aa19.11■□□□□ 0.65
USP40-206ENST00000443711 LDHCP07864 332 aa19.1■□□□□ 0.65
USP40-206ENST00000443711 USP17L8P0C7I0 530 aa19.1■□□□□ 0.65
USP40-206ENST00000443711 GSTO1P78417 241 aa19.1■□□□□ 0.65
USP40-206ENST00000443711 MECOMQ03112 1051 aa19.1■□□□□ 0.65
USP40-206ENST00000443711 SLF2Q8IX21 1173 aa19.1■□□□□ 0.65
USP40-206ENST00000443711 MRIQ9BWK5 157 aa19.1■□□□□ 0.65
USP40-206ENST00000443711 MYH2Q9UKX2 1941 aa19.1■□□□□ 0.65
USP40-206ENST00000443711 ZFYP08048 801 aaPredicted RBP19.09■□□□□ 0.65
USP40-206ENST00000443711 HDLBPQ00341 1268 aaKnown RBP19.09■□□□□ 0.65
USP40-206ENST00000443711 SLC9C2Q5TAH2 1124 aa19.09■□□□□ 0.65
USP40-206ENST00000443711 NAA16Q6N069 864 aaPredicted RBP19.09■□□□□ 0.65
USP40-206ENST00000443711 NSUN4Q96CB9 384 aaKnown RBP19.09■□□□□ 0.65
USP40-206ENST00000443711 CNOT7Q9UIV1 285 aaKnown RBP19.09■□□□□ 0.65
USP40-206ENST00000443711 H7C1D1 291 aa19.08■□□□□ 0.64
USP40-206ENST00000443711 LMOD1P29536 600 aaPredicted RBP19.08■□□□□ 0.64
USP40-206ENST00000443711 SCNN1DP51172 638 aa19.08■□□□□ 0.64
USP40-206ENST00000443711 L3MBTL3Q96JM7 780 aaPredicted RBP19.08■□□□□ 0.64
USP40-206ENST00000443711 GPRC5DQ9NZD1 345 aa19.08■□□□□ 0.64
USP40-206ENST00000443711 MAST2Q6P0Q8 1798 aa19.08■□□□□ 0.64
USP40-206ENST00000443711 RNF113AO15541 343 aaKnown RBP19.07■□□□□ 0.64
USP40-206ENST00000443711 PDE6AP16499 860 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 CYP7A1P22680 504 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 ADD2P35612 726 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 ZNF280AP59817 542 aaPredicted RBP19.07■□□□□ 0.64
USP40-206ENST00000443711 HHIPL2Q6UWX4 724 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 MICALL2Q8IY33 904 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 MAGEB6Q8N7X4 407 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 TEKT1Q969V4 418 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 FAM163AQ96GL9 167 aaPredicted RBP19.07■□□□□ 0.64
USP40-206ENST00000443711 SERPINA10Q9UK55 444 aa19.07■□□□□ 0.64
USP40-206ENST00000443711 RFX7Q2KHR2 1363 aa19.06■□□□□ 0.64
USP40-206ENST00000443711 HIP1O00291 1037 aa19.06■□□□□ 0.64
USP40-206ENST00000443711 UBE3CQ15386 1083 aa19.06■□□□□ 0.64
USP40-206ENST00000443711 DIXDC1Q155Q3 683 aa19.06■□□□□ 0.64
USP40-206ENST00000443711 ZNF384Q8TF68 577 aa19.06■□□□□ 0.64
USP40-206ENST00000443711 ZNF532Q9HCE3 1301 aa19.05■□□□□ 0.64
USP40-206ENST00000443711 CRKP46108 304 aa19.05■□□□□ 0.64
USP40-206ENST00000443711 RBM5P52756 815 aaKnown RBP eCLIP19.05■□□□□ 0.64
USP40-206ENST00000443711 SCN4AP35499 1836 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 MROH7-TTC4A0A0A0MT08 1334 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 TCRBV5S4A2TA0A5A2 114 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 EPS15P42566 896 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 DLGAP5Q15398 846 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 CFAP100Q494V2 611 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 WDR90Q96KV7 1748 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 NOL10Q9BSC4 688 aaKnown RBP19.04■□□□□ 0.64
USP40-206ENST00000443711 MYOZ2Q9NPC6 264 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 DIAPH3Q9NSV4 1193 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 HACL1Q9UJ83 578 aa19.04■□□□□ 0.64
USP40-206ENST00000443711 GAKO14976 1311 aa19.03■□□□□ 0.64
USP40-206ENST00000443711 SHTN1A0MZ66 631 aa19.03■□□□□ 0.64
USP40-206ENST00000443711 IQCA1LA6NCM1 817 aa19.03■□□□□ 0.64
USP40-206ENST00000443711 MTMR14Q8NCE2 650 aa19.03■□□□□ 0.64
USP40-206ENST00000443711 APPBP2Q92624 585 aa19.03■□□□□ 0.64
USP40-206ENST00000443711 ZDHHC15Q96MV8 337 aa19.03■□□□□ 0.64
USP40-206ENST00000443711 DAGLAQ9Y4D2 1042 aa19.03■□□□□ 0.64
USP40-206ENST00000443711 GPR75-ASB3A0A0A6YYF3 556 aa19.02■□□□□ 0.64
USP40-206ENST00000443711 BAG3O95817 575 aa19.02■□□□□ 0.64
USP40-206ENST00000443711 ZMYM1Q5SVZ6 1142 aa19.02■□□□□ 0.64
USP40-206ENST00000443711 RBM26Q5T8P6 1007 aaKnown RBP19.02■□□□□ 0.64
USP40-206ENST00000443711 ADARB2Q9NS39 739 aaKnown RBP19.02■□□□□ 0.64
USP40-206ENST00000443711 CDC45O75419 566 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 CHGBP05060 677 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 CHMLP26374 656 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 BTDP43251 543 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 NMIQ13287 307 aaPredicted RBP19.01■□□□□ 0.63
USP40-206ENST00000443711 SLFNL1Q499Z3 407 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 TBC1D10BQ4KMP7 808 aaPredicted RBP19.01■□□□□ 0.63
USP40-206ENST00000443711 SAMD7Q7Z3H4 446 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 ADGRA1Q86SQ6 560 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 HELLSQ9NRZ9 838 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 ADAMTSL1Q8N6G6 1762 aa19.01■□□□□ 0.63
USP40-206ENST00000443711 MAGEB6P1A0A0J9YX57 407 aa19■□□□□ 0.63
USP40-206ENST00000443711 SPDYE2BA6NHP3 402 aa19■□□□□ 0.63
USP40-206ENST00000443711 POTECB2RU33 542 aa19■□□□□ 0.63
USP40-206ENST00000443711 SPDYE6P0CI01 402 aa19■□□□□ 0.63
USP40-206ENST00000443711 VEGFAP15692 232 aaPredicted RBP19■□□□□ 0.63
USP40-206ENST00000443711 EPHX2P34913 555 aa19■□□□□ 0.63
USP40-206ENST00000443711 PPP4CP60510 307 aa19■□□□□ 0.63
USP40-206ENST00000443711 KIF4BQ2VIQ3 1234 aa19■□□□□ 0.63
USP40-206ENST00000443711 APOBEC3HQ6NTF7 200 aaKnown RBP19■□□□□ 0.63
USP40-206ENST00000443711 CASC1Q6TDU7 716 aa19■□□□□ 0.63
USP40-206ENST00000443711 CERS3Q8IU89 383 aa19■□□□□ 0.63
USP40-206ENST00000443711 RUFY2Q8WXA3 655 aa19■□□□□ 0.63
USP40-206ENST00000443711 OSBP2Q969R2 916 aa19■□□□□ 0.63
USP40-206ENST00000443711 ZBED3Q96IU2 234 aaPredicted RBP19■□□□□ 0.63
USP40-206ENST00000443711 PRMT6Q96LA8 375 aaPredicted RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms