RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 ACBD3Q9H3P7 528 aa8.53□□□□□ -1.04
CPSF6-202ENST00000435070 CDC23Q9UJX2 597 aa8.53□□□□□ -1.04
CPSF6-202ENST00000435070 MROH2AA6NES4 1674 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 SPTLC2O15270 562 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 ZNF827Q17R98 1081 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 ADALQ6DHV7 355 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 SYNE3Q6ZMZ3 975 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 TMEM139Q8IV31 216 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 EAF2Q96CJ1 260 aaPredicted RBP8.52□□□□□ -1.04
CPSF6-202ENST00000435070 CD248Q9HCU0 757 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 CTDP1Q9Y5B0 961 aaPredicted RBP8.52□□□□□ -1.04
CPSF6-202ENST00000435070 GLI2P10070 1586 aa8.52□□□□□ -1.04
CPSF6-202ENST00000435070 CAMSAP1Q5T5Y3 1602 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 NCAPH2Q6IBW4 605 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 OLFM4Q6UX06 510 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 SLC35F6Q8N357 371 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 HSD3B7Q9H2F3 369 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CTAGE15A4D2H0 777 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CTAGE8P0CG41 777 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 POLA2Q14181 598 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 HSP90AB4PQ58FF6 505 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CTAGE6Q86UF2 777 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CTAGE4Q8IX94 777 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 KIRREL3Q8IZU9 778 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 KCNB2Q92953 911 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 INO80Q9ULG1 1556 aaPredicted RBP8.52□□□□□ -1.05
CPSF6-202ENST00000435070 RPS6KA5O75582 802 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CTDNEP1O95476 244 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 ABL1P00519 1130 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 PFKFB1P16118 471 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 ILDR1Q86SU0 546 aaPredicted RBP8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CARD10Q9BWT7 1032 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 INTS13Q9NVM9 706 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 RPGRIP1LQ68CZ1 1315 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CCDC175P0C221 793 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 CEP112Q8N8E3 955 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 KAT14Q9H8E8 782 aa8.52□□□□□ -1.05
CPSF6-202ENST00000435070 SPECC1Q5M775 1068 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 GPHNQ9NQX3 736 aaPredicted RBP8.51□□□□□ -1.05
CPSF6-202ENST00000435070 TET3O43151 1660 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 GOLGA6L9A6NEM1 432 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 TC2NQ8N9U0 490 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 TCEAL9Q9UHQ7 104 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 DEPDC5O75140 1603 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 NEBLO76041 1014 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 A1BGP04217 495 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 RDXP35241 583 aaKnown RBP8.51□□□□□ -1.05
CPSF6-202ENST00000435070 USP8P40818 1118 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 SYKP43405 635 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 LINC00301Q8NCQ3 95 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 CYP21A2P08686 494 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 ACTN3Q08043 901 aaPredicted RBP8.51□□□□□ -1.05
CPSF6-202ENST00000435070 TAF5LO75529 589 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 CRACR2AQ9BSW2 395 aa8.51□□□□□ -1.05
CPSF6-202ENST00000435070 SSBP05455 408 aaKnown RBP eCLIP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 MRPS25P82663 173 aaKnown RBP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 NAA16Q6N069 864 aaPredicted RBP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 CAPZA3Q96KX2 299 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 A0A0G2JLW4 131 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 CTAGE9A4FU28 777 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 SATB1Q01826 763 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 PDE4BQ07343 736 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 G3BP1Q13283 466 aaKnown RBP eCLIP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 LRCH2Q5VUJ6 765 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 CEP57Q86XR8 500 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 NGDNQ8NEJ9 315 aaKnown RBP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 HNRNPLLQ8WVV9 542 aaKnown RBP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 CCDC196A0A1B0GTZ2 297 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 FOXN1O15353 648 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 STX10O60499 249 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 KLHL10Q6JEL2 608 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 RAD9BQ6WBX8 426 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 ACRBPQ8NEB7 543 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 GBP3Q9H0R5 595 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 NFE2L3Q9Y4A8 694 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 EID1Q9Y6B2 187 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 ENC1O14682 589 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 CPP00450 1065 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 GGCXP38435 758 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 SETBP1Q9Y6X0 1596 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 SYF2O95926 243 aaKnown RBP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 RNF187Q5TA31 235 aaPredicted RBP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 N4BP2L2Q92802 583 aaPredicted RBP8.5□□□□□ -1.05
CPSF6-202ENST00000435070 FAM107BQ9H098 131 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 NPATQ14207 1427 aa8.5□□□□□ -1.05
CPSF6-202ENST00000435070 POTEB2H3BUK9 544 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 PES1O00541 588 aaKnown RBP8.49□□□□□ -1.05
CPSF6-202ENST00000435070 SPECC1LQ69YQ0 1117 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 C8orf76Q96K31 380 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.49□□□□□ -1.05
CPSF6-202ENST00000435070 MED4Q9NPJ6 270 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 RAB21Q9UL25 225 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 MAP2P11137 1827 aaKnown RBP8.49□□□□□ -1.05
CPSF6-202ENST00000435070 MAP3K19Q56UN5 1328 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 MAP3K5Q99683 1374 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 ZEB2O60315 1214 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 CDC27P30260 824 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 IRAK1P51617 712 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 GNGT1P63211 74 aa8.49□□□□□ -1.05
CPSF6-202ENST00000435070 FCHSD1Q86WN1 690 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms