RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PPP2R3AQ06190 1150 aa9.78□□□□□ -0.84
CCDC88A-206ENST00000430086 MBTPS1Q14703 1052 aa9.78□□□□□ -0.84
CCDC88A-206ENST00000430086 DUOXA2Q1HG44 320 aa9.78□□□□□ -0.84
CCDC88A-206ENST00000430086 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.78□□□□□ -0.84
CCDC88A-206ENST00000430086 TRIM56Q9BRZ2 755 aaKnown RBP9.78□□□□□ -0.84
CCDC88A-206ENST00000430086 CEP44Q9C0F1 390 aa9.78□□□□□ -0.84
CCDC88A-206ENST00000430086 MRS2Q9HD23 443 aa9.78□□□□□ -0.84
CCDC88A-206ENST00000430086 F8W735 103 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-206ENST00000430086 WISP1O95388 367 aa9.77□□□□□ -0.85
CCDC88A-206ENST00000430086 CYP11A1P05108 521 aa9.77□□□□□ -0.85
CCDC88A-206ENST00000430086 AP3B2Q13367 1082 aa9.77□□□□□ -0.85
CCDC88A-206ENST00000430086 NECAB3Q96P71 396 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-206ENST00000430086 GPN3Q9UHW5 284 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-206ENST00000430086 CTSHP09668 335 aa9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 ZNF157P51786 506 aaPredicted RBP9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 MRPL58Q14197 206 aaKnown RBP9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 KIAA1211Q6ZU35 1233 aa9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 TXNRD3Q86VQ6 643 aa9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 UBASH3BQ8TF42 649 aa9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 WFDC12Q8WWY7 111 aa9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 CRELD1Q96HD1 420 aa9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 AKTIPQ9H8T0 292 aa9.76□□□□□ -0.85
CCDC88A-206ENST00000430086 LOC100289279A0A1B0GTE1 492 aa9.75□□□□□ -0.85
CCDC88A-206ENST00000430086 POU4F3Q15319 338 aa9.75□□□□□ -0.85
CCDC88A-206ENST00000430086 TPTE2Q6XPS3 522 aa9.75□□□□□ -0.85
CCDC88A-206ENST00000430086 ACAD11Q709F0 780 aa9.75□□□□□ -0.85
CCDC88A-206ENST00000430086 VTI1BQ9UEU0 232 aa9.75□□□□□ -0.85
CCDC88A-206ENST00000430086 MEGF11A6BM72 1044 aa9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 ENC1O14682 589 aa9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 NOS3P29474 1203 aa9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 ST13P50502 369 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 Q6ZS46 218 aa9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 SV2BQ7L1I2 683 aa9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 USP26Q9BXU7 913 aa9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 TTF2Q9UNY4 1162 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 USP31Q70CQ4 1352 aa9.74□□□□□ -0.85
CCDC88A-206ENST00000430086 MAOBP27338 520 aa9.73□□□□□ -0.85
CCDC88A-206ENST00000430086 GATA4P43694 442 aa9.73□□□□□ -0.85
CCDC88A-206ENST00000430086 TAF1CQ15572 869 aaPredicted RBP9.73□□□□□ -0.85
CCDC88A-206ENST00000430086 CORO1BQ9BR76 489 aa9.73□□□□□ -0.85
CCDC88A-206ENST00000430086 FBXO24O75426 580 aa9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 ALX3O95076 343 aa9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 NME2P22392 152 aa9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 IREB2P48200 963 aaKnown RBP9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 HP1BP3Q5SSJ5 553 aaPredicted RBP9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 MEI1Q5TIA1 1274 aa9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 RUSC1Q9BVN2 902 aa9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 TMPRSS13Q9BYE2 586 aa9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 RNF208Q9H0X6 261 aa9.72□□□□□ -0.85
CCDC88A-206ENST00000430086 DLGAP3O95886 979 aa9.71□□□□□ -0.86
CCDC88A-206ENST00000430086 IGHA1P01876 353 aa9.71□□□□□ -0.86
CCDC88A-206ENST00000430086 ARNTP27540 789 aa9.71□□□□□ -0.86
CCDC88A-206ENST00000430086 EXOSC6Q5RKV6 272 aaKnown RBP9.71□□□□□ -0.86
CCDC88A-206ENST00000430086 SULF2Q8IWU5 870 aa9.71□□□□□ -0.86
CCDC88A-206ENST00000430086 AGGF1Q8N302 714 aaeCLIP9.71□□□□□ -0.86
CCDC88A-206ENST00000430086 SAMM50Q9Y512 469 aa9.71□□□□□ -0.86
CCDC88A-206ENST00000430086 PROCP04070 461 aa9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 CTSBP07858 339 aa9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 GSTP1P09211 210 aaKnown RBP9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 VAMP1P23763 118 aa9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 PDZD3Q86UT5 571 aa9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 NOC4LQ9BVI4 516 aaKnown RBP9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 SSBP4Q9BWG4 385 aaPredicted RBP9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 EMILIN2Q9BXX0 1053 aa9.7□□□□□ -0.86
CCDC88A-206ENST00000430086 MSTNO14793 375 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 PAGE1O75459 146 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 ECEL1O95672 775 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 CELA3AP09093 270 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 BMP6P22004 513 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 CCDC85BQ15834 202 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 DZIP1LQ8IYY4 767 aaKnown RBP9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 STK35Q8TDR2 534 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 SPOCK3Q9BQ16 436 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 CEP41Q9BYV8 373 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 SUGCTQ9HAC7 445 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 KRT82Q9NSB4 513 aa9.69□□□□□ -0.86
CCDC88A-206ENST00000430086 SYNGAP1Q96PV0 1343 aa9.68□□□□□ -0.86
CCDC88A-206ENST00000430086 ANKRD34AQ69YU3 496 aa9.68□□□□□ -0.86
CCDC88A-206ENST00000430086 GPAT2Q6NUI2 795 aa9.68□□□□□ -0.86
CCDC88A-206ENST00000430086 SMG8Q8ND04 991 aaKnown RBP9.68□□□□□ -0.86
CCDC88A-206ENST00000430086 ZNF252P-AS1Q0IIN9 211 aa9.67□□□□□ -0.86
CCDC88A-206ENST00000430086 NUTM2GQ5VZR2 741 aa9.67□□□□□ -0.86
CCDC88A-206ENST00000430086 SCARA3Q6AZY7 606 aa9.67□□□□□ -0.86
CCDC88A-206ENST00000430086 MEGF10Q96KG7 1140 aa9.67□□□□□ -0.86
CCDC88A-206ENST00000430086 CYP4F12Q9HCS2 524 aa9.67□□□□□ -0.86
CCDC88A-206ENST00000430086 RLBP1P12271 317 aa9.66□□□□□ -0.86
CCDC88A-206ENST00000430086 GLB1P16278 677 aa9.66□□□□□ -0.86
CCDC88A-206ENST00000430086 LDLRAD1Q5T700 205 aa9.66□□□□□ -0.86
CCDC88A-206ENST00000430086 PCNX4Q63HM2 1172 aa9.66□□□□□ -0.86
CCDC88A-206ENST00000430086 CCDC86Q9H6F5 360 aaKnown RBP9.66□□□□□ -0.86
CCDC88A-206ENST00000430086 CACNA2D2Q9NY47 1150 aa9.66□□□□□ -0.86
CCDC88A-206ENST00000430086 CYP8B1Q9UNU6 501 aa9.66□□□□□ -0.86
CCDC88A-206ENST00000430086 TIAF1O95411 115 aa9.65□□□□□ -0.86
CCDC88A-206ENST00000430086 HNRNPUQ00839 825 aaKnown RBP eCLIP9.65□□□□□ -0.86
CCDC88A-206ENST00000430086 LRRC14Q15048 493 aa9.65□□□□□ -0.86
CCDC88A-206ENST00000430086 UVSSAQ2YD98 709 aa9.65□□□□□ -0.86
CCDC88A-206ENST00000430086 FDX2Q6P4F2 183 aa9.65□□□□□ -0.86
CCDC88A-206ENST00000430086 FAM46AQ96IP4 442 aaKnown RBP9.65□□□□□ -0.86
CCDC88A-206ENST00000430086 UBL7Q96S82 380 aaPredicted RBP9.65□□□□□ -0.86
CCDC88A-206ENST00000430086 UNCXA6NJT0 531 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms