RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 RNF113AO15541 343 aaKnown RBP11.48□□□□□ -0.57
HMGCLL1-206ENST00000428842 UQCRFS1P1P0C7P4 283 aa11.48□□□□□ -0.57
HMGCLL1-206ENST00000428842 CYP7A1P22680 504 aa11.48□□□□□ -0.57
HMGCLL1-206ENST00000428842 MYH7P12883 1935 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 MBD4O95243 580 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 CD2BP2O95400 341 aaKnown RBP11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 ADD2P35612 726 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 NOL8Q76FK4 1167 aaKnown RBP11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 NSUN4Q96CB9 384 aaKnown RBP11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 USP26Q9BXU7 913 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 MED23Q9ULK4 1368 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 IL1R1P14778 569 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 DEKP35659 375 aaKnown RBP11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 KIAA2012Q0VF49 1180 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 C22orf23Q9BZE7 217 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 LSG1Q9H089 658 aaKnown RBP11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 TAOK3Q9H2K8 898 aa11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 GNL3LQ9NVN8 582 aaKnown RBP11.47□□□□□ -0.57
HMGCLL1-206ENST00000428842 BAZ2AQ9UIF9 1905 aaKnown RBP11.46□□□□□ -0.57
HMGCLL1-206ENST00000428842 PSMD14O00487 310 aa11.46□□□□□ -0.57
HMGCLL1-206ENST00000428842 GPAA1O43292 621 aa11.46□□□□□ -0.57
HMGCLL1-206ENST00000428842 NBR1Q14596 966 aa11.46□□□□□ -0.57
HMGCLL1-206ENST00000428842 ADCK5Q3MIX3 580 aa11.46□□□□□ -0.57
HMGCLL1-206ENST00000428842 SPRYD3Q8NCJ5 442 aa11.46□□□□□ -0.57
HMGCLL1-206ENST00000428842 UPF3BQ9BZI7 483 aaKnown RBP11.46□□□□□ -0.57
HMGCLL1-206ENST00000428842 FER1L6Q2WGJ9 1857 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 MYH2Q9UKX2 1941 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 APPP05067 770 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 ZMYM1Q5SVZ6 1142 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 DLK2Q6UY11 383 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 CHMP4CQ96CF2 233 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 KIF2CQ99661 725 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 GJA3Q9Y6H8 435 aa11.46□□□□□ -0.58
HMGCLL1-206ENST00000428842 RBM26Q5T8P6 1007 aaKnown RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 CHST3Q7LGC8 479 aa11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 DZIP1Q86YF9 867 aaKnown RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 RTFDC1Q9BY42 306 aaPredicted RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 TTF2Q9UNY4 1162 aaKnown RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 LDHBP07195 334 aaKnown RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 IARSP41252 1262 aaKnown RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 CXCL9Q07325 125 aa11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 GPR162Q16538 588 aa11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 MCMDC2Q4G0Z9 681 aa11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 NAA16Q6N069 864 aaPredicted RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 ZNF512BQ96KM6 892 aaPredicted RBP11.45□□□□□ -0.58
HMGCLL1-206ENST00000428842 ASTN2O75129 1339 aaPredicted RBP11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 ZNF541Q9H0D2 1346 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 HSPD1P10809 573 aaKnown RBP11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 MAP3K12Q12852 859 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 DACT2Q5SW24 774 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 SH3RF3Q8TEJ3 882 aaPredicted RBP11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 COA1Q9GZY4 146 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 EPB41L4AQ9HCS5 686 aaPredicted RBP11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 RBM8AQ9Y5S9 174 aaKnown RBP11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 TACC3Q9Y6A5 838 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 DOCK2Q92608 1830 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 CYP2D6P10635 497 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 RBM5P52756 815 aaKnown RBP eCLIP11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 RTKN2Q8IZC4 609 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 AIDAQ96BJ3 306 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 DDRGK1Q96HY6 314 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 TBC1D32Q96NH3 1257 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 LRRC2Q9BYS8 371 aa11.44□□□□□ -0.58
HMGCLL1-206ENST00000428842 PICALMQ13492 652 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 CASC1Q6TDU7 716 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 TMC4Q7Z404 712 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 CDAN1Q8IWY9 1227 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 EYA3Q99504 573 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 SAP30BPQ9UHR5 308 aaKnown RBP11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 CCDC171Q6TFL3 1326 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 CTDSPL2Q05D32 466 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 ZFPM1Q8IX07 1006 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 APPBP2Q92624 585 aa11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 STRBPQ96SI9 672 aaKnown RBP11.43□□□□□ -0.58
HMGCLL1-206ENST00000428842 PPFIA3O75145 1194 aa11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 FGAP02671 866 aa11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 TCP10Q12799 353 aa11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 NFIAQ12857 509 aa11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 TTF1Q15361 905 aaPredicted RBP11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 C15orf52Q6ZUT6 534 aaKnown RBP11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 PSMD1Q99460 953 aa11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 RIOK1Q9BRS2 568 aaKnown RBP11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 FOXD4L1Q9NU39 408 aa11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 SLC4A4Q9Y6R1 1079 aa11.42□□□□□ -0.58
HMGCLL1-206ENST00000428842 CLRN2A0PK11 232 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 USP17L3A6NCW0 530 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 USP17L4A6NCW7 530 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 FAM196BA6NMK8 535 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 PRDM1O75626 825 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 CYP21A2P08686 494 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 BTDP43251 543 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 STOX1Q6ZVD7 989 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 USP17L1Q7RTZ2 530 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 SAMD7Q7Z3H4 446 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 MAPKAPK5Q8IW41 473 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 NIM1KQ8IY84 436 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 NBPF3Q9H094 633 aa11.41□□□□□ -0.58
HMGCLL1-206ENST00000428842 GPHNQ9NQX3 736 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms