RNA–Protein interactions for RNA: ENST00000428626.5

SEC13-210, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 3

Gene SEC13, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-210ENST00000428626 SUPT20HL1Q3ZLR7 823 aa19.47■□□□□ 0.71
SEC13-210ENST00000428626 VPS37DQ86XT2 251 aa19.47■□□□□ 0.71
SEC13-210ENST00000428626 CFHR5Q9BXR6 569 aa19.47■□□□□ 0.71
SEC13-210ENST00000428626 TCP10L2B9ZVM9 353 aa19.46■□□□□ 0.71
SEC13-210ENST00000428626 IGF2BP3O00425 579 aaKnown RBP eCLIP19.46■□□□□ 0.71
SEC13-210ENST00000428626 MLLT1Q03111 559 aaPredicted RBP19.46■□□□□ 0.71
SEC13-210ENST00000428626 PUM3Q15397 648 aaKnown RBP19.46■□□□□ 0.71
SEC13-210ENST00000428626 CAVIN4Q5BKX8 364 aa19.46■□□□□ 0.71
SEC13-210ENST00000428626 TMEM39BQ9GZU3 492 aa19.46■□□□□ 0.71
SEC13-210ENST00000428626 CACNB3P54284 484 aa19.45■□□□□ 0.7
SEC13-210ENST00000428626 TNRC18O15417 2968 aaPredicted RBP19.45■□□□□ 0.7
SEC13-210ENST00000428626 ZBTB48P10074 688 aaPredicted RBP19.44■□□□□ 0.7
SEC13-210ENST00000428626 SOX10P56693 466 aa19.44■□□□□ 0.7
SEC13-210ENST00000428626 NOM1Q5C9Z4 860 aaKnown RBP19.44■□□□□ 0.7
SEC13-210ENST00000428626 IFNL1Q8IU54 200 aa19.44■□□□□ 0.7
SEC13-210ENST00000428626 KIF16BQ96L93 1317 aa19.44■□□□□ 0.7
SEC13-210ENST00000428626 MANSC4A6NHS7 340 aaPredicted RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 CCER2I3L3R5 266 aa19.43■□□□□ 0.7
SEC13-210ENST00000428626 FRAT2O75474 233 aaPredicted RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 IFIT1P09914 478 aaKnown RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 CT47B1P0C2W7 299 aaPredicted RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 IREB2P48200 963 aaKnown RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 HDLBPQ00341 1268 aaKnown RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 TNFAIP1Q13829 316 aa19.43■□□□□ 0.7
SEC13-210ENST00000428626 APOBEC3HQ6NTF7 200 aaKnown RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 TBC1D22AQ8WUA7 517 aa19.43■□□□□ 0.7
SEC13-210ENST00000428626 CNKSR2Q8WXI2 1034 aa19.43■□□□□ 0.7
SEC13-210ENST00000428626 SIL1Q9H173 461 aa19.43■□□□□ 0.7
SEC13-210ENST00000428626 HPS5Q9UPZ3 1129 aa19.43■□□□□ 0.7
SEC13-210ENST00000428626 LRRFIP2Q9Y608 721 aaKnown RBP19.43■□□□□ 0.7
SEC13-210ENST00000428626 UNCXA6NJT0 531 aa19.42■□□□□ 0.7
SEC13-210ENST00000428626 UBTFL1P0CB47 393 aaPredicted RBP19.42■□□□□ 0.7
SEC13-210ENST00000428626 RARSP54136 660 aaKnown RBP19.42■□□□□ 0.7
SEC13-210ENST00000428626 ANKRD13AQ8IZ07 590 aa19.42■□□□□ 0.7
SEC13-210ENST00000428626 MEIS3Q99687 375 aa19.42■□□□□ 0.7
SEC13-210ENST00000428626 PTPN18Q99952 460 aa19.42■□□□□ 0.7
SEC13-210ENST00000428626 ELP3Q9H9T3 547 aa19.42■□□□□ 0.7
SEC13-210ENST00000428626 PA2G4Q9UQ80 394 aaKnown RBP19.42■□□□□ 0.7
SEC13-210ENST00000428626 MYH13Q9UKX3 1938 aa19.42■□□□□ 0.7
SEC13-210ENST00000428626 LPIN2Q92539 896 aa19.41■□□□□ 0.7
SEC13-210ENST00000428626 TEKT1Q969V4 418 aa19.41■□□□□ 0.7
SEC13-210ENST00000428626 ZDHHC15Q96MV8 337 aa19.41■□□□□ 0.7
SEC13-210ENST00000428626 HTTP42858 3142 aa19.4■□□□□ 0.7
SEC13-210ENST00000428626 FKTNO75072 461 aa19.4■□□□□ 0.7
SEC13-210ENST00000428626 SLC5A1P13866 664 aa19.4■□□□□ 0.7
SEC13-210ENST00000428626 INHBEP58166 350 aa19.4■□□□□ 0.7
SEC13-210ENST00000428626 MRIQ9BWK5 157 aa19.4■□□□□ 0.7
SEC13-210ENST00000428626 API5Q9BZZ5 524 aaKnown RBP19.4■□□□□ 0.7
SEC13-210ENST00000428626 TNNQ9UQP3 1299 aa19.4■□□□□ 0.7
SEC13-210ENST00000428626 PDE4DIPQ5VU43 2346 aa19.39■□□□□ 0.69
SEC13-210ENST00000428626 CIAO1O76071 339 aa19.39■□□□□ 0.69
SEC13-210ENST00000428626 CAP1Q01518 475 aa19.39■□□□□ 0.69
SEC13-210ENST00000428626 VGLL4Q14135 290 aa19.39■□□□□ 0.69
SEC13-210ENST00000428626 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.39■□□□□ 0.69
SEC13-210ENST00000428626 OPTNQ96CV9 577 aa19.39■□□□□ 0.69
SEC13-210ENST00000428626 MS4A4AQ96JQ5 239 aa19.39■□□□□ 0.69
SEC13-210ENST00000428626 TESPA1A2RU30 521 aaPredicted RBP19.38■□□□□ 0.69
SEC13-210ENST00000428626 ALDH1A1P00352 501 aa19.38■□□□□ 0.69
SEC13-210ENST00000428626 PKN2Q16513 984 aaKnown RBP19.38■□□□□ 0.69
SEC13-210ENST00000428626 ATP2B3Q16720 1220 aa19.38■□□□□ 0.69
SEC13-210ENST00000428626 SUGT1Q9Y2Z0 365 aa19.38■□□□□ 0.69
SEC13-210ENST00000428626 PRDX5P30044 214 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 ADORA1P30542 326 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 PHKA1P46020 1223 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 TNNI2P48788 182 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 CRHR2Q13324 411 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 DIXDC1Q155Q3 683 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 HHIPL2Q6UWX4 724 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 CEP126Q9P2H0 1117 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 FBXO3Q9UK99 471 aa19.37■□□□□ 0.69
SEC13-210ENST00000428626 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.37■□□□□ 0.69
SEC13-210ENST00000428626 MAP3K9P80192 1104 aa19.36■□□□□ 0.69
SEC13-210ENST00000428626 INTS3Q68E01 1043 aaKnown RBP19.36■□□□□ 0.69
SEC13-210ENST00000428626 FBXO46Q6PJ61 603 aaPredicted RBP19.36■□□□□ 0.69
SEC13-210ENST00000428626 WDR66Q8TBY9 1149 aa19.36■□□□□ 0.69
SEC13-210ENST00000428626 BRI3BPQ8WY22 251 aa19.36■□□□□ 0.69
SEC13-210ENST00000428626 COPRSQ9NQ92 184 aa19.36■□□□□ 0.69
SEC13-210ENST00000428626 DAGLAQ9Y4D2 1042 aa19.36■□□□□ 0.69
SEC13-210ENST00000428626 MAST3O60307 1309 aa19.35■□□□□ 0.69
SEC13-210ENST00000428626 FKBP1CQ5VVH2 108 aa19.35■□□□□ 0.69
SEC13-210ENST00000428626 FAM83AQ86UY5 434 aa19.35■□□□□ 0.69
SEC13-210ENST00000428626 SNCAIPQ9Y6H5 919 aa19.35■□□□□ 0.69
SEC13-210ENST00000428626 IL15P40933 162 aaPredicted RBP19.34■□□□□ 0.69
SEC13-210ENST00000428626 NFIAQ12857 509 aa19.34■□□□□ 0.69
SEC13-210ENST00000428626 ARHGAP45Q92619 1136 aa19.34■□□□□ 0.69
SEC13-210ENST00000428626 BCAR3O75815 825 aa19.33■□□□□ 0.68
SEC13-210ENST00000428626 TRIM27P14373 513 aa19.33■□□□□ 0.68
SEC13-210ENST00000428626 CDC42EP5Q6NZY7 148 aa19.33■□□□□ 0.68
SEC13-210ENST00000428626 OTOP1Q7RTM1 612 aa19.33■□□□□ 0.68
SEC13-210ENST00000428626 FAM43AQ8N2R8 423 aa19.33■□□□□ 0.68
SEC13-210ENST00000428626 ZKSCAN4Q969J2 545 aaPredicted RBP19.33■□□□□ 0.68
SEC13-210ENST00000428626 OTUD5Q96G74 571 aa19.33■□□□□ 0.68
SEC13-210ENST00000428626 TRIM17Q9Y577 477 aa19.33■□□□□ 0.68
SEC13-210ENST00000428626 RPAP1Q9BWH6 1393 aaPredicted RBP19.32■□□□□ 0.68
SEC13-210ENST00000428626 SPDYE5A6NIY4 337 aa19.32■□□□□ 0.68
SEC13-210ENST00000428626 TIMM10P62072 90 aa19.32■□□□□ 0.68
SEC13-210ENST00000428626 CCDC102BQ68D86 513 aa19.32■□□□□ 0.68
SEC13-210ENST00000428626 MIGA2Q7L4E1 593 aa19.32■□□□□ 0.68
SEC13-210ENST00000428626 CD99L2Q8TCZ2 262 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms