RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 KSR2Q6VAB6 950 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 FERMT2Q96AC1 680 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 PA2G4Q9UQ80 394 aaKnown RBP16.4■□□□□ 0.22
PTPRU-204ENST00000428026 METP08581 1390 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 MAGI2Q86UL8 1455 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 GJC1P36383 396 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 RTN1Q16799 776 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 ZNF335Q9H4Z2 1342 aaPredicted RBP16.4■□□□□ 0.22
PTPRU-204ENST00000428026 ZBTB16Q05516 673 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 LMBR1LQ6UX01 489 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 TSC1Q92574 1164 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 IQCGQ9H095 443 aaKnown RBP16.4■□□□□ 0.22
PTPRU-204ENST00000428026 A0A1B0GUL7 405 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 MCMDC2Q4G0Z9 681 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 RASAL2Q9UJF2 1139 aa16.4■□□□□ 0.22
PTPRU-204ENST00000428026 POLR3AO14802 1390 aaPredicted RBP16.39■□□□□ 0.22
PTPRU-204ENST00000428026 SAMD9LQ8IVG5 1584 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 A0A1B0GVL5 298 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 SBNO1A3KN83 1393 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 MLH3Q9UHC1 1453 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 PLEKHG3A1L390 1219 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 NBPF7P0C2Y1 421 aaPredicted RBP16.39■□□□□ 0.21
PTPRU-204ENST00000428026 BAG1Q99933 345 aaPredicted RBP16.39■□□□□ 0.21
PTPRU-204ENST00000428026 USP26Q9BXU7 913 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 STX8Q9UNK0 236 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 DTNBO60941 627 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 TBCAO75347 108 aaKnown RBP16.39■□□□□ 0.21
PTPRU-204ENST00000428026 ACTN2P35609 894 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 APBB1IPQ7Z5R6 666 aaPredicted RBP16.39■□□□□ 0.21
PTPRU-204ENST00000428026 TTC16Q8NEE8 873 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 TBC1D5Q92609 795 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 STK32BQ9NY57 414 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 COMMD10Q9Y6G5 202 aa16.39■□□□□ 0.21
PTPRU-204ENST00000428026 ARHGEF5Q12774 1597 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 UGGT1Q9NYU2 1555 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 VAV2P52735 878 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 PDE4BQ07343 736 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 TSPYL6Q8N831 410 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 SAMM50Q9Y512 469 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 ZFYVE9O95405 1425 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 PTPDC1A2A3K4 754 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 ATP8B2P98198 1209 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 CCDC25Q86WR0 208 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 PLEKHM2Q8IWE5 1019 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 CFAP58Q5T655 872 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 SLF2Q8IX21 1173 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 MYRIPQ8NFW9 859 aa16.38■□□□□ 0.21
PTPRU-204ENST00000428026 HPDP32754 393 aaPredicted RBP16.37■□□□□ 0.21
PTPRU-204ENST00000428026 CREB3L3Q68CJ9 461 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 CARD6Q9BX69 1037 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 KCNK9Q9NPC2 374 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 CEP83Q9Y592 693 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 EFCAB6Q5THR3 1501 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 GRM8O00222 908 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 RXRAP19793 462 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 F8W031 263 aaPredicted RBP16.37■□□□□ 0.21
PTPRU-204ENST00000428026 LGR6Q9HBX8 967 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 PARD3Q8TEW0 1356 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 APBA3O96018 575 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 CWF19L2Q2TBE0 894 aaKnown RBP16.37■□□□□ 0.21
PTPRU-204ENST00000428026 IFIT1BQ5T764 474 aaKnown RBP16.37■□□□□ 0.21
PTPRU-204ENST00000428026 HEATR3Q7Z4Q2 680 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 AFAP1L1Q8TED9 768 aa16.37■□□□□ 0.21
PTPRU-204ENST00000428026 CCDC122Q5T0U0 273 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 STXBP4Q6ZWJ1 553 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 CCDC77Q9BR77 488 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 NYXQ9GZU5 481 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 IL13P35225 146 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 CCT6AP40227 531 aaKnown RBP16.36■□□□□ 0.21
PTPRU-204ENST00000428026 FAM173BQ6P4H8 233 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 UBLCP1Q8WVY7 318 aaPredicted RBP16.36■□□□□ 0.21
PTPRU-204ENST00000428026 PLIN2Q99541 437 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 FERP16591 822 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 PLVAPQ9BX97 442 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 LRRC27Q9C0I9 530 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 PLEKHG1Q9ULL1 1385 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 TRIM75PA6NK02 468 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 ZNF790Q6PG37 636 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 INTS4Q96HW7 963 aaKnown RBP16.36■□□□□ 0.21
PTPRU-204ENST00000428026 RSRC1Q96IZ7 334 aaKnown RBP16.36■□□□□ 0.21
PTPRU-204ENST00000428026 MRVI1Q9Y6F6 885 aa16.36■□□□□ 0.21
PTPRU-204ENST00000428026 CCDC172P0C7W6 258 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 CEP85Q6P2H3 762 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 GSTA5Q7RTV2 222 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 SAMD15Q9P1V8 674 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 BMP15O95972 392 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 CCDC174Q6PII3 467 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 STMN4Q9H169 189 aaPredicted RBP16.35■□□□□ 0.21
PTPRU-204ENST00000428026 NSFL1CQ9UNZ2 370 aaKnown RBP16.35■□□□□ 0.21
PTPRU-204ENST00000428026 DCTPP1Q9H773 170 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 RUFY3Q7L099 469 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 ARFGAP2Q8N6H7 521 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 TSNARE1Q96NA8 513 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 SMC6Q96SB8 1091 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 LUC7L2Q9Y383 392 aaKnown RBP16.35■□□□□ 0.21
PTPRU-204ENST00000428026 SLC4A4Q9Y6R1 1079 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 KDM5DQ9BY66 1539 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 IRS4O14654 1257 aaPredicted RBP16.35■□□□□ 0.21
PTPRU-204ENST00000428026 CHMLP26374 656 aa16.35■□□□□ 0.21
PTPRU-204ENST00000428026 CCDC63Q8NA47 563 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms