RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 IMMTQ16891 758 aaKnown RBP10.02□□□□□ -0.81
USP40-203ENST00000427112 USP49Q70CQ1 688 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 MNS1Q8NEH6 495 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 PLIN2Q99541 437 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 CTNNA3Q9UI47 895 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 FAM205CA6NFA0 338 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 MTF1Q14872 753 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 DHX37Q8IY37 1157 aaKnown RBP10.02□□□□□ -0.81
USP40-203ENST00000427112 GDAP1L1Q96MZ0 367 aa10.02□□□□□ -0.81
USP40-203ENST00000427112 PUF60Q9UHX1 559 aaKnown RBP10.02□□□□□ -0.81
USP40-203ENST00000427112 CDC27P30260 824 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 SYKP43405 635 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 EVA1CP58658 441 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 FANCCQ00597 558 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 NR5A1Q13285 461 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 E4F1Q66K89 784 aaPredicted RBP10.01□□□□□ -0.81
USP40-203ENST00000427112 CYB5R4Q7L1T6 521 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 NBPF11Q86T75 865 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 COPRSQ9NQ92 184 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 ERBB3P21860 1342 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 PHACTR2O75167 634 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 CDC25AP30304 524 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 MYSM1Q5VVJ2 828 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 MON2Q7Z3U7 1717 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 DNAJC10Q8IXB1 793 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 NEK11Q8NG66 645 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 ARMT1Q9H993 441 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 ASAP1Q9ULH1 1129 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 HDAC5Q9UQL6 1122 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 UTRNP46939 3433 aa10.01□□□□□ -0.81
USP40-203ENST00000427112 CYP2D7A0A087X1C5 515 aa10□□□□□ -0.81
USP40-203ENST00000427112 BTBD18B2RXH4 712 aa10□□□□□ -0.81
USP40-203ENST00000427112 ANKRD65E5RJM6 399 aa10□□□□□ -0.81
USP40-203ENST00000427112 ATF3P18847 181 aa10□□□□□ -0.81
USP40-203ENST00000427112 METAP2P50579 478 aaKnown RBP eCLIP10□□□□□ -0.81
USP40-203ENST00000427112 FOXO4P98177 505 aa10□□□□□ -0.81
USP40-203ENST00000427112 WWC2Q6AWC2 1192 aa10□□□□□ -0.81
USP40-203ENST00000427112 ZSCAN16Q9H4T2 348 aaPredicted RBP10□□□□□ -0.81
USP40-203ENST00000427112 KIAA1468Q9P260 1216 aa10□□□□□ -0.81
USP40-203ENST00000427112 RCOR1Q9UKL0 485 aa10□□□□□ -0.81
USP40-203ENST00000427112 WWC3Q9ULE0 1092 aa10□□□□□ -0.81
USP40-203ENST00000427112 RGPD2P0DJD1 1756 aa10□□□□□ -0.81
USP40-203ENST00000427112 DIP2AQ14689 1571 aa10□□□□□ -0.81
USP40-203ENST00000427112 EYA2O00167 538 aa10□□□□□ -0.81
USP40-203ENST00000427112 GNG11P61952 73 aa10□□□□□ -0.81
USP40-203ENST00000427112 HLFQ16534 295 aa10□□□□□ -0.81
USP40-203ENST00000427112 BICDL1Q6ZP65 573 aa10□□□□□ -0.81
USP40-203ENST00000427112 TBC1D10CQ8IV04 446 aa10□□□□□ -0.81
USP40-203ENST00000427112 LINC00301Q8NCQ3 95 aa10□□□□□ -0.81
USP40-203ENST00000427112 CNNM3Q8NE01 707 aa10□□□□□ -0.81
USP40-203ENST00000427112 PPP1R13BQ96KQ4 1090 aa10□□□□□ -0.81
USP40-203ENST00000427112 RABEP2Q9H5N1 569 aa10□□□□□ -0.81
USP40-203ENST00000427112 GREM2Q9H772 168 aa10□□□□□ -0.81
USP40-203ENST00000427112 PHKA1P46020 1223 aa10□□□□□ -0.81
USP40-203ENST00000427112 ANTXR2P58335 489 aa10□□□□□ -0.81
USP40-203ENST00000427112 PDE4BQ07343 736 aa10□□□□□ -0.81
USP40-203ENST00000427112 VPS37DQ86XT2 251 aa10□□□□□ -0.81
USP40-203ENST00000427112 ELP1O95163 1332 aa10□□□□□ -0.81
USP40-203ENST00000427112 USP42Q9H9J4 1324 aaKnown RBP10□□□□□ -0.81
USP40-203ENST00000427112 IFIT3O14879 490 aaKnown RBP9.99□□□□□ -0.81
USP40-203ENST00000427112 TPM3P06753 285 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 PRR29P0C7W0 189 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 KRT40Q6A162 431 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 FMR1NBQ8N0W7 255 aaPredicted RBP9.99□□□□□ -0.81
USP40-203ENST00000427112 MRPS25P82663 173 aaKnown RBP9.99□□□□□ -0.81
USP40-203ENST00000427112 TMEM67Q5HYA8 995 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 ANO1Q5XXA6 986 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 ANKRD7Q92527 254 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 NAT10Q9H0A0 1025 aaKnown RBP9.99□□□□□ -0.81
USP40-203ENST00000427112 TFR2Q9UP52 801 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 XRN1Q8IZH2 1706 aaKnown RBP9.99□□□□□ -0.81
USP40-203ENST00000427112 GOLGA8AA7E2F4 631 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 EVX2Q03828 476 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 IFIT5Q13325 482 aaKnown RBP9.99□□□□□ -0.81
USP40-203ENST00000427112 ZMYM1Q5SVZ6 1142 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 PIK3C2AO00443 1686 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 SPATA31D1Q6ZQQ2 1576 aa9.99□□□□□ -0.81
USP40-203ENST00000427112 POLR2DO15514 142 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 SLU7O95391 586 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 HOXB7P09629 217 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 DHX8Q14562 1220 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 NOM1Q5C9Z4 860 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 PLEKHA4Q9H4M7 779 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 PCDHA5Q9Y5H7 936 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 TOP1P11387 765 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 MCAMP43121 646 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 ENGASEQ8NFI3 743 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 SDR42E1Q8WUS8 393 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 UBXN4Q92575 508 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 AIDAQ96BJ3 306 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 DHX58Q96C10 678 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 PIH1D3Q9NQM4 214 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 SAMSN1Q9NSI8 373 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 TRMT112Q9UI30 125 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 TECPR2O15040 1411 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 CCT6AP40227 531 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 RBM6P78332 1123 aaKnown RBP9.98□□□□□ -0.81
USP40-203ENST00000427112 TRIM29Q14134 588 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 MAGEB6Q8N7X4 407 aa9.98□□□□□ -0.81
USP40-203ENST00000427112 OXER1Q8TDS5 423 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms