RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 NMRK2Q9NPI5 230 aa14.71□□□□□ -0.05
LINC00539-202ENST00000423575 RAI14Q9P0K7 980 aa14.71□□□□□ -0.05
LINC00539-202ENST00000423575 LRP2BPQ9P2M1 347 aa14.71□□□□□ -0.05
LINC00539-202ENST00000423575 GSPT1P15170 499 aaKnown RBP14.7□□□□□ -0.06
LINC00539-202ENST00000423575 RGS3P49796 1198 aa14.7□□□□□ -0.06
LINC00539-202ENST00000423575 MECOMQ03112 1051 aa14.7□□□□□ -0.06
LINC00539-202ENST00000423575 TTF1Q15361 905 aaPredicted RBP14.7□□□□□ -0.06
LINC00539-202ENST00000423575 DIXDC1Q155Q3 683 aa14.7□□□□□ -0.06
LINC00539-202ENST00000423575 TTC22Q5TAA0 569 aa14.7□□□□□ -0.06
LINC00539-202ENST00000423575 DZIP1Q86YF9 867 aaKnown RBP14.7□□□□□ -0.06
LINC00539-202ENST00000423575 TRPM4Q8TD43 1214 aa14.7□□□□□ -0.06
LINC00539-202ENST00000423575 HACL1Q9UJ83 578 aa14.7□□□□□ -0.06
LINC00539-202ENST00000423575 PCDHAC2Q9Y5I4 1007 aa14.7□□□□□ -0.06
LINC00539-202ENST00000423575 MAST3O60307 1309 aa14.69□□□□□ -0.06
LINC00539-202ENST00000423575 IQCA1LA6NCM1 817 aa14.69□□□□□ -0.06
LINC00539-202ENST00000423575 H7C1D1 291 aa14.69□□□□□ -0.06
LINC00539-202ENST00000423575 TBC1D10BQ4KMP7 808 aaPredicted RBP14.69□□□□□ -0.06
LINC00539-202ENST00000423575 SAMD7Q7Z3H4 446 aa14.69□□□□□ -0.06
LINC00539-202ENST00000423575 OGFOD1Q8N543 542 aa14.69□□□□□ -0.06
LINC00539-202ENST00000423575 NSUN4Q96CB9 384 aaKnown RBP14.69□□□□□ -0.06
LINC00539-202ENST00000423575 TAF1DQ9H5J8 278 aaPredicted RBP14.69□□□□□ -0.06
LINC00539-202ENST00000423575 RRAGCQ9HB90 399 aa14.69□□□□□ -0.06
LINC00539-202ENST00000423575 HDAC9Q9UKV0 1011 aa14.69□□□□□ -0.06
LINC00539-202ENST00000423575 VEGFAP15692 232 aaPredicted RBP14.68□□□□□ -0.06
LINC00539-202ENST00000423575 EPHX2P34913 555 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 CRKP46108 304 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 HDLBPQ00341 1268 aaKnown RBP14.68□□□□□ -0.06
LINC00539-202ENST00000423575 MAP3K12Q12852 859 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 KIF4BQ2VIQ3 1234 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 CFAP100Q494V2 611 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 KBTBD3Q8NAB2 608 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 TEKT1Q969V4 418 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 ZBED3Q96IU2 234 aaPredicted RBP14.68□□□□□ -0.06
LINC00539-202ENST00000423575 MYOZ2Q9NPC6 264 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 ADARB2Q9NS39 739 aaKnown RBP14.68□□□□□ -0.06
LINC00539-202ENST00000423575 SERPINA10Q9UK55 444 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 DAGLAQ9Y4D2 1042 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 MAST2Q6P0Q8 1798 aa14.68□□□□□ -0.06
LINC00539-202ENST00000423575 GAKO14976 1311 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 DOCK2Q92608 1830 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 IGSF3O75054 1194 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 CHGBP05060 677 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 PDE6AP16499 860 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 MMP14P50281 582 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 HIRAP54198 1017 aaPredicted RBP14.67□□□□□ -0.06
LINC00539-202ENST00000423575 SLFNL1Q499Z3 407 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 RBM26Q5T8P6 1007 aaKnown RBP14.67□□□□□ -0.06
LINC00539-202ENST00000423575 NAA16Q6N069 864 aaPredicted RBP14.67□□□□□ -0.06
LINC00539-202ENST00000423575 HHIPL2Q6UWX4 724 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 MAGEB6Q8N7X4 407 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 EVI5LQ96CN4 794 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 FSD1Q9BTV5 496 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 GPBP1L1Q9HC44 474 aaPredicted RBP14.67□□□□□ -0.06
LINC00539-202ENST00000423575 ADAMTSL1Q8N6G6 1762 aa14.67□□□□□ -0.06
LINC00539-202ENST00000423575 MROH7-TTC4A0A0A0MT08 1334 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 SPDYE2BA6NHP3 402 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 TRIM6-TRIM34B2RNG4 842 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 SPDYE6P0CI01 402 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 CYP7A1P22680 504 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 RBM5P52756 815 aaKnown RBP eCLIP14.66□□□□□ -0.06
LINC00539-202ENST00000423575 DLGAP5Q15398 846 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 SLC9C2Q5TAH2 1124 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 ADGRA1Q86SQ6 560 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 CNTROBQ8N137 903 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 ZNF784Q8NCA9 323 aaPredicted RBP14.66□□□□□ -0.06
LINC00539-202ENST00000423575 MTMR14Q8NCE2 650 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 ZDHHC15Q96MV8 337 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 MRIQ9BWK5 157 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 SCN4AP35499 1836 aa14.66□□□□□ -0.06
LINC00539-202ENST00000423575 ASTN2O75129 1339 aaPredicted RBP14.66□□□□□ -0.06
LINC00539-202ENST00000423575 TCRBV5S4A2TA0A5A2 114 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 WNT10BO00744 389 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 SDSP20132 328 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 ADD2P35612 726 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 GSTO1P78417 241 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 NBPF9Q3BBW0 867 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 APOBEC3HQ6NTF7 200 aaKnown RBP14.65□□□□□ -0.06
LINC00539-202ENST00000423575 USP50Q70EL3 339 aaPredicted RBP14.65□□□□□ -0.06
LINC00539-202ENST00000423575 RILPL2Q969X0 211 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 FAM163AQ96GL9 167 aaPredicted RBP14.65□□□□□ -0.06
LINC00539-202ENST00000423575 PRMT6Q96LA8 375 aaPredicted RBP14.65□□□□□ -0.06
LINC00539-202ENST00000423575 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.65□□□□□ -0.06
LINC00539-202ENST00000423575 MYO5AQ9Y4I1 1855 aaKnown RBP14.65□□□□□ -0.06
LINC00539-202ENST00000423575 ZNF532Q9HCE3 1301 aa14.65□□□□□ -0.06
LINC00539-202ENST00000423575 RFX7Q2KHR2 1363 aa14.64□□□□□ -0.07
LINC00539-202ENST00000423575 LDHCP07864 332 aa14.64□□□□□ -0.07
LINC00539-202ENST00000423575 POTEIP0CG38 1075 aa14.64□□□□□ -0.07
LINC00539-202ENST00000423575 POTEJP0CG39 1038 aa14.64□□□□□ -0.07
LINC00539-202ENST00000423575 EAPPQ56P03 285 aaPredicted RBP14.64□□□□□ -0.07
LINC00539-202ENST00000423575 SLF2Q8IX21 1173 aa14.64□□□□□ -0.07
LINC00539-202ENST00000423575 GPR75-ASB3A0A0A6YYF3 556 aa14.63□□□□□ -0.07
LINC00539-202ENST00000423575 KIF3CO14782 793 aa14.63□□□□□ -0.07
LINC00539-202ENST00000423575 RNF113AO15541 343 aaKnown RBP14.63□□□□□ -0.07
LINC00539-202ENST00000423575 BTDP43251 543 aa14.63□□□□□ -0.07
LINC00539-202ENST00000423575 UBE3CQ15386 1083 aa14.63□□□□□ -0.07
LINC00539-202ENST00000423575 BMP2KLQ5H9B9 411 aa14.63□□□□□ -0.07
LINC00539-202ENST00000423575 ZSCAN25Q6NSZ9 544 aa14.63□□□□□ -0.07
LINC00539-202ENST00000423575 TMED8Q6PL24 325 aaPredicted RBP14.63□□□□□ -0.07
LINC00539-202ENST00000423575 PNMA8AQ86V59 439 aaPredicted RBP14.63□□□□□ -0.07
LINC00539-202ENST00000423575 MIGA1Q8NAN2 632 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms