RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ATP6V1DQ9Y5K8 247 aa17.63■□□□□ 0.41
USP4-203ENST00000415188 TMEM88BA6NKF7 163 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 NCLP19338 710 aaKnown RBP17.62■□□□□ 0.41
USP4-203ENST00000415188 KCNJ4P48050 445 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 GMPSP49915 693 aaPredicted RBP17.62■□□□□ 0.41
USP4-203ENST00000415188 RPS8P62241 208 aaKnown RBP17.62■□□□□ 0.41
USP4-203ENST00000415188 ANKRD1Q15327 319 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 CIAPIN1Q6FI81 312 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 GPT2Q8TD30 523 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 GPR101Q96P66 508 aaPredicted RBP17.62■□□□□ 0.41
USP4-203ENST00000415188 BOLA2Q9H3K6 86 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 GPRC5DQ9NZD1 345 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 POLLQ9UGP5 575 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 SMC3Q9UQE7 1217 aa17.62■□□□□ 0.41
USP4-203ENST00000415188 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.62■□□□□ 0.41
USP4-203ENST00000415188 HSPA1AP0DMV8 641 aaKnown RBP17.61■□□□□ 0.41
USP4-203ENST00000415188 HSPA1BP0DMV9 641 aaKnown RBP17.61■□□□□ 0.41
USP4-203ENST00000415188 FMR1Q06787 632 aaKnown RBP eCLIP17.61■□□□□ 0.41
USP4-203ENST00000415188 FAM227BQ96M60 508 aa17.61■□□□□ 0.41
USP4-203ENST00000415188 DBNLQ9UJU6 430 aaKnown RBP17.61■□□□□ 0.41
USP4-203ENST00000415188 CNTNAP1P78357 1384 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 C6orf229H3BNL8 230 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 SLC27A2O14975 620 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 RIMBP2O15034 1052 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 PDE8AO60658 829 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 NASPP49321 788 aaPredicted RBP17.6■□□□□ 0.41
USP4-203ENST00000415188 FOXO4P98177 505 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 TFCP2Q12800 502 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 KRT32Q14532 448 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 WASHC4Q2M389 1173 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 USP50Q70EL3 339 aaPredicted RBP17.6■□□□□ 0.41
USP4-203ENST00000415188 KLHDC4Q8TBB5 520 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 HAUS7Q99871 368 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 DBNDD1Q9H9R9 158 aa17.6■□□□□ 0.41
USP4-203ENST00000415188 A0A0D9SFI3 127 aa17.59■□□□□ 0.41
USP4-203ENST00000415188 ZSCAN22P10073 491 aaPredicted RBP17.59■□□□□ 0.41
USP4-203ENST00000415188 PPP1R9BQ96SB3 815 aa17.59■□□□□ 0.41
USP4-203ENST00000415188 ADARB2Q9NS39 739 aaKnown RBP17.59■□□□□ 0.41
USP4-203ENST00000415188 SHTN1A0MZ66 631 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 STX6O43752 255 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 CIAO1O76071 339 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 HSP90B1P14625 803 aaKnown RBP17.58■□□□□ 0.41
USP4-203ENST00000415188 IL15P40933 162 aaPredicted RBP17.58■□□□□ 0.41
USP4-203ENST00000415188 TNIP1Q15025 636 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 CSPP1Q1MSJ5 1256 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 CCDC152Q4G0S7 254 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 COL13A1Q5TAT6 717 aaPredicted RBP17.58■□□□□ 0.41
USP4-203ENST00000415188 LMBR1LQ6UX01 489 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 TBC1D16Q8TBP0 767 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 FBXO3Q9UK99 471 aa17.58■□□□□ 0.41
USP4-203ENST00000415188 TRAF5O00463 557 aa17.57■□□□□ 0.4
USP4-203ENST00000415188 DOK7Q18PE1 504 aa17.57■□□□□ 0.4
USP4-203ENST00000415188 ADCK5Q3MIX3 580 aa17.57■□□□□ 0.4
USP4-203ENST00000415188 BLOC1S2Q6QNY1 142 aa17.57■□□□□ 0.4
USP4-203ENST00000415188 LRSAM1Q6UWE0 723 aa17.57■□□□□ 0.4
USP4-203ENST00000415188 U3KPZ7 1027 aaPredicted RBP17.57■□□□□ 0.4
USP4-203ENST00000415188 CDHR2Q9BYE9 1310 aa17.57■□□□□ 0.4
USP4-203ENST00000415188 PSMD14O00487 310 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 TAF5LO75529 589 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 VEGFBP49765 207 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.56■□□□□ 0.4
USP4-203ENST00000415188 TRIM44Q96DX7 344 aaPredicted RBP17.56■□□□□ 0.4
USP4-203ENST00000415188 KCNQ5Q9NR82 932 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 ZBTB12Q9Y330 459 aaPredicted RBP17.56■□□□□ 0.4
USP4-203ENST00000415188 ZNF609O15014 1411 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 ECE2O60344 883 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 F13A1P00488 732 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 SYT1P21579 422 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 HIRAP54198 1017 aaPredicted RBP17.56■□□□□ 0.4
USP4-203ENST00000415188 CTSWP56202 376 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 FOXD4L5Q5VV16 416 aaPredicted RBP17.56■□□□□ 0.4
USP4-203ENST00000415188 TRPM4Q8TD43 1214 aa17.56■□□□□ 0.4
USP4-203ENST00000415188 FOXD4L4Q8WXT5 416 aaPredicted RBP17.56■□□□□ 0.4
USP4-203ENST00000415188 TCHHQ07283 1943 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 EYA2O00167 538 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 UFL1O94874 794 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 RPS6KB1P23443 525 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 EYA3Q99504 573 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 DBNDD2Q9BQY9 259 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 PODXL2Q9NZ53 605 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 TMEM63CQ9P1W3 806 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 ANKIB1Q9P2G1 1089 aa17.55■□□□□ 0.4
USP4-203ENST00000415188 CNOT7Q9UIV1 285 aaKnown RBP17.55■□□□□ 0.4
USP4-203ENST00000415188 ABT1Q9ULW3 272 aaKnown RBP17.55■□□□□ 0.4
USP4-203ENST00000415188 PDCP20941 246 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 MCMDC2Q4G0Z9 681 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 ATG9AQ7Z3C6 839 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 ANKRD18AQ8IVF6 992 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 CCDC83Q8IWF9 413 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 MICALL2Q8IY33 904 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 KBTBD3Q8NAB2 608 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 TTLL11Q8NHH1 800 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 PLA2G12BQ9BX93 195 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 RRAGDQ9NQL2 400 aaPredicted RBP17.54■□□□□ 0.4
USP4-203ENST00000415188 RTL9Q8NET4 1388 aa17.54■□□□□ 0.4
USP4-203ENST00000415188 RASSF10A6NK89 507 aa17.53■□□□□ 0.4
USP4-203ENST00000415188 LETM1O95202 739 aaPredicted RBP17.53■□□□□ 0.4
USP4-203ENST00000415188 GJB2P29033 226 aa17.53■□□□□ 0.4
USP4-203ENST00000415188 CLCN1P35523 988 aa17.53■□□□□ 0.4
USP4-203ENST00000415188 DEFB115Q30KQ5 88 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms