RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 KLHDC4Q8TBB5 520 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 ZDHHC15Q96MV8 337 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 TMOD2Q9NZR1 351 aa7.88□□□□□ -1.15
USP54-202ENST00000413442 TTF2Q9UNY4 1162 aaKnown RBP7.88□□□□□ -1.15
USP54-202ENST00000413442 A0A1B0GUL7 405 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 SNAP23O00161 211 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 NPM3O75607 178 aaKnown RBP7.87□□□□□ -1.15
USP54-202ENST00000413442 SURF6O75683 361 aaKnown RBP7.87□□□□□ -1.15
USP54-202ENST00000413442 LDHBP07195 334 aaKnown RBP7.87□□□□□ -1.15
USP54-202ENST00000413442 KLRK1P26718 216 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 CRKP46108 304 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 VEGFBP49765 207 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 RBM5P52756 815 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP54-202ENST00000413442 HUNKP57058 714 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 GSTO1P78417 241 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 CCDC102BQ68D86 513 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 AIDAQ96BJ3 306 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 CDCA5Q96FF9 252 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 CAPNS2Q96L46 248 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 PRMT6Q96LA8 375 aaPredicted RBP7.87□□□□□ -1.15
USP54-202ENST00000413442 SIL1Q9H173 461 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 DEFB129Q9H1M3 183 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 PRDM10Q9NQV6 1147 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 ZBTB40Q9NUA8 1239 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 WBP1LQ9NX94 342 aa7.87□□□□□ -1.15
USP54-202ENST00000413442 ARAP2Q8WZ64 1704 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 PNMA6EA0A0J9YXQ4 647 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 TRAF5O00463 557 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 EGFRP00533 1210 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 TIMM10P62072 90 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 TFCP2Q12800 502 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 OS9Q13438 667 aaPredicted RBP7.86□□□□□ -1.15
USP54-202ENST00000413442 SPDYE2Q495Y8 402 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 CNKSR2Q8WXI2 1034 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 XAGE2Q96GT9 111 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 NEUROD6Q96NK8 337 aa7.86□□□□□ -1.15
USP54-202ENST00000413442 MKRN1Q9UHC7 482 aaKnown RBP7.86□□□□□ -1.15
USP54-202ENST00000413442 PAPPA2Q9BXP8 1791 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 SHTN1A0MZ66 631 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 ALDH1A1P00352 501 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 ARID4AP29374 1257 aaPredicted RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 IREB2P48200 963 aaKnown RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 CTCFP49711 727 aaPredicted RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 ZNF157P51786 506 aaPredicted RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 LDLRAD1Q5T700 205 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 ERICH6Q7L0X2 663 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 CLASRPQ8N2M8 674 aaKnown RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 KIF1BPQ96EK5 621 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 ZNF408Q9H9D4 720 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 RNF216Q9NWF9 866 aaPredicted RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 SAGE1Q9NXZ1 904 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 ZNF70Q9UC06 446 aaPredicted RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 TAOK2Q9UL54 1235 aa7.85□□□□□ -1.15
USP54-202ENST00000413442 PA2G4Q9UQ80 394 aaKnown RBP7.85□□□□□ -1.15
USP54-202ENST00000413442 ENTPD3O75355 529 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 ZBTB48P10074 688 aaPredicted RBP7.84□□□□□ -1.15
USP54-202ENST00000413442 RLBP1P12271 317 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 PLCG2P16885 1265 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 TM4SF4P48230 202 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 HTRA3P83110 453 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 CHAF1AQ13111 956 aaPredicted RBP7.84□□□□□ -1.15
USP54-202ENST00000413442 TTF1Q15361 905 aaPredicted RBP7.84□□□□□ -1.15
USP54-202ENST00000413442 TNNI3KQ59H18 835 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 NOM1Q5C9Z4 860 aaKnown RBP7.84□□□□□ -1.15
USP54-202ENST00000413442 DCAF15Q66K64 600 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 CEP85Q6P2H3 762 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 ANKRD13AQ8IZ07 590 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 SPATA5Q8NB90 893 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.84□□□□□ -1.15
USP54-202ENST00000413442 FAM151AQ8WW52 585 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 MXD3Q9BW11 206 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 IDI2Q9BXS1 227 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 FPGT-TNNI3KV9GXZ4 949 aa7.84□□□□□ -1.15
USP54-202ENST00000413442 AKAP11Q9UKA4 1901 aa7.84□□□□□ -1.16
USP54-202ENST00000413442 ADM5C9JUS6 153 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 F8W031 263 aaPredicted RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 BAG3O95817 575 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 SLC10A3P09131 477 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 HSPA1AP0DMV8 641 aaKnown RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 HSPA1BP0DMV9 641 aaKnown RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 PHKA1P46020 1223 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 SREBF2Q12772 1141 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 RASA3Q14644 834 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 OTUD7BQ6GQQ9 843 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 CYP4F22Q6NT55 531 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 APOBEC3HQ6NTF7 200 aaKnown RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 PAXIP1Q6ZW49 1069 aaPredicted RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 DZIP1Q86YF9 867 aaKnown RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 PANK1Q8TE04 598 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 SLC10A4Q96EP9 437 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 NOL10Q9BSC4 688 aaKnown RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 CFHR5Q9BXR6 569 aa7.83□□□□□ -1.16
USP54-202ENST00000413442 TDRD3Q9H7E2 651 aaKnown RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 RPAP1Q9BWH6 1393 aaPredicted RBP7.83□□□□□ -1.16
USP54-202ENST00000413442 THSD7BQ9C0I4 1608 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 MYH2Q9UKX2 1941 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 GPR75-ASB3A0A0A6YYF3 556 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 MANSC4A6NHS7 340 aaPredicted RBP7.82□□□□□ -1.16
USP54-202ENST00000413442 FAM155AB1AL88 458 aaPredicted RBP7.82□□□□□ -1.16
USP54-202ENST00000413442 WDHD1O75717 1129 aaPredicted RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms