RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 STIM1Q13586 685 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 UVSSAQ2YD98 709 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 OVOS2Q6IE36 1432 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 FEZ1Q99689 392 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 DIP2BQ9P265 1576 aa12.88□□□□□ -0.35
PTPRF-204ENST00000412568 ANGEL1Q9UNK9 670 aaKnown RBP12.88□□□□□ -0.35
PTPRF-204ENST00000412568 ERBB4Q15303 1308 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 IL6STP40189 918 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-204ENST00000412568 FAM47AQ5JRC9 791 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 TMTC2Q8N394 836 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 MRPS27Q92552 414 aaKnown RBP12.87□□□□□ -0.35
PTPRF-204ENST00000412568 PLIN2Q99541 437 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 QTRT2Q9H974 415 aaKnown RBP12.87□□□□□ -0.35
PTPRF-204ENST00000412568 HLA-DOAP06340 250 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 UBA7P41226 1012 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 TMX1Q9H3N1 280 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 VEZTQ9HBM0 779 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 PODXL2Q9NZ53 605 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 CRB1P82279 1406 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 IQGAP1P46940 1657 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 CTAGE5O15320 804 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 GNAT2P19087 354 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 GSTO1P78417 241 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 SUSD4Q5VX71 490 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 MAPKAPK5Q8IW41 473 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 TEX11Q8IYF3 940 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 DACH1Q9UI36 760 aa12.87□□□□□ -0.35
PTPRF-204ENST00000412568 SMTNL1A8MU46 457 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 UIMC1Q96RL1 719 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 ARGLU1Q9NWB6 273 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-204ENST00000412568 V9GY48 417 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-204ENST00000412568 USP17L12C9JPN9 530 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 USP17L21D6R901 530 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 ERFEQ4G0M1 354 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 LUZP1Q86V48 1076 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 MAP4K1Q92918 833 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 CABP5Q9NP86 173 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 MROH5Q6ZUA9 1318 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 ADCY9O60503 1353 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 MROH2AA6NES4 1674 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 MAPK8IP2Q13387 824 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-204ENST00000412568 UBA5Q9GZZ9 404 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 KCNJ14Q9UNX9 436 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 MED14O60244 1454 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 AGLP35573 1532 aa12.86□□□□□ -0.35
PTPRF-204ENST00000412568 SFPQP23246 707 aaKnown RBP eCLIP12.85□□□□□ -0.35
PTPRF-204ENST00000412568 LMOD1P29536 600 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-204ENST00000412568 ZNF445P59923 1031 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 ENOX2Q16206 610 aaKnown RBP12.85□□□□□ -0.35
PTPRF-204ENST00000412568 FAM200AQ8TCP9 573 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 BMP2KQ9NSY1 1161 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-204ENST00000412568 CDC42BPGQ6DT37 1551 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 LARGE1O95461 756 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 TYRO3Q06418 890 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 TTLL11Q8NHH1 800 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 OSBP2Q969R2 916 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 DHX58Q96C10 678 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 C16orf45Q96MC5 204 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-204ENST00000412568 ZKSCAN5Q9Y2L8 839 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 TCP10Q12799 353 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 KCNG4Q8TDN1 519 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 GGA1Q9UJY5 639 aa12.85□□□□□ -0.35
PTPRF-204ENST00000412568 H7C1W4 665 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 STX1AQ16623 288 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 TMC6Q7Z403 805 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 TGFBRAP1Q8WUH2 860 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 ZSWIM6Q9HCJ5 1215 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 GPHNQ9NQX3 736 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-204ENST00000412568 EIF5P55010 431 aaKnown RBP12.84□□□□□ -0.35
PTPRF-204ENST00000412568 AOPEPQ8N6M6 819 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 PUS7LQ9H0K6 701 aaKnown RBP12.84□□□□□ -0.35
PTPRF-204ENST00000412568 MCM7P33993 719 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 NAPAP54920 295 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 GTF2IP78347 998 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 WDR78Q5VTH9 848 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 PRKAB2O43741 272 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 CBX1P83916 185 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 CCDC186Q7Z3E2 898 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 OGFOD1Q8N543 542 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 SMARCE1Q969G3 411 aa12.84□□□□□ -0.35
PTPRF-204ENST00000412568 GPR101Q96P66 508 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-204ENST00000412568 PREX1Q8TCU6 1659 aa12.83□□□□□ -0.35
PTPRF-204ENST00000412568 ZNF174Q15697 407 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 GPT2Q8TD30 523 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 DSCC1Q9BVC3 393 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 MAST3O60307 1309 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 CCDC66A2RUB6 948 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 TRIM75PA6NK02 468 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 IFNL3Q8IZI9 196 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 TM6SF1Q9BZW5 370 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 PDCL3Q9H2J4 239 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.83□□□□□ -0.36
PTPRF-204ENST00000412568 M0R2C6 588 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 STX17P56962 302 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 RBM17Q96I25 401 aaKnown RBP12.83□□□□□ -0.36
PTPRF-204ENST00000412568 TCP11L1Q9NUJ3 509 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 TNS3Q68CZ2 1445 aa12.83□□□□□ -0.36
PTPRF-204ENST00000412568 TOP1P11387 765 aaKnown RBP12.82□□□□□ -0.36
PTPRF-204ENST00000412568 DOK7Q18PE1 504 aa12.82□□□□□ -0.36
PTPRF-204ENST00000412568 DEF6Q9H4E7 631 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 320.6 ms