RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 XDHP47989 1333 aa13.63□□□□□ -0.23
LINC00539-201ENST00000411525 MYH7P12883 1935 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 DUOX1Q9NRD9 1551 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 MYH13Q9UKX3 1938 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 YDJCA8MPS7 323 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 C6orf229H3BNL8 230 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 GOLIM4O00461 696 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 REC8O95072 547 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 RPS12P25398 132 aaKnown RBP13.62□□□□□ -0.23
LINC00539-201ENST00000411525 MCAMP43121 646 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 SCARF1Q14162 830 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 MICALL2Q8IY33 904 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 KBTBD3Q8NAB2 608 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 TBC1D32Q96NH3 1257 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 DOCK2Q92608 1830 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 ZNF804BA4D1E1 1349 aa13.62□□□□□ -0.23
LINC00539-201ENST00000411525 HIRAP54198 1017 aaPredicted RBP13.61□□□□□ -0.23
LINC00539-201ENST00000411525 TICAM2Q86XR7 235 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 RUFY2Q8WXA3 655 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 ABHD8Q96I13 439 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 ZNF408Q9H9D4 720 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 ANKIB1Q9P2G1 1089 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 LEMD3Q9Y2U8 911 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 CASP8AP2Q9UKL3 1982 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 RAD50Q92878 1312 aa13.61□□□□□ -0.23
LINC00539-201ENST00000411525 PSMD14O00487 310 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 SGSM2O43147 1006 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 ANP32AP39687 249 aaKnown RBP13.6□□□□□ -0.23
LINC00539-201ENST00000411525 ZAP70P43403 619 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 CAVIN4Q5BKX8 364 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 TRPM4Q8TD43 1214 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 C22orf23Q9BZE7 217 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 ZC3H12CQ9C0D7 883 aaKnown RBP13.6□□□□□ -0.23
LINC00539-201ENST00000411525 DBNDD1Q9H9R9 158 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 SNRKQ9NRH2 765 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 POLLQ9UGP5 575 aa13.6□□□□□ -0.23
LINC00539-201ENST00000411525 G3V3G9 751 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 RIMBP2O15034 1052 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 ECE2O60344 883 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 AOC2O75106 756 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 ATP2B4P23634 1241 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 KLRK1P26718 216 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 GYG1P46976 350 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 BCAMP50895 628 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 GPSM2P81274 684 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 NOGQ13253 232 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 NMIQ13287 307 aaPredicted RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 RASGRF1Q13972 1273 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 TTF1Q15361 905 aaPredicted RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 LRRFIP1Q32MZ4 808 aaKnown RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 DCAF8Q5TAQ9 597 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 CWC27Q6UX04 472 aaKnown RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 PI16Q6UXB8 463 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 VPS37DQ86XT2 251 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 TBC1D16Q8TBP0 767 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 DCPSQ96C86 337 aaKnown RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 ANTXR1Q9H6X2 564 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 GNL3LQ9NVN8 582 aaKnown RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 PODXL2Q9NZ53 605 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 HMG20BQ9P0W2 317 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 ZBTB12Q9Y330 459 aaPredicted RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 COL1A1P02452 1464 aaPredicted RBP13.59□□□□□ -0.23
LINC00539-201ENST00000411525 IRS2Q9Y4H2 1338 aa13.59□□□□□ -0.23
LINC00539-201ENST00000411525 MED23Q9ULK4 1368 aa13.58□□□□□ -0.23
LINC00539-201ENST00000411525 PSME4Q14997 1843 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 A0A0D9SFI3 127 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 WTIPA6NIX2 430 aaPredicted RBP13.58□□□□□ -0.24
LINC00539-201ENST00000411525 UFL1O94874 794 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 RBM25P49756 843 aaKnown RBP13.58□□□□□ -0.24
LINC00539-201ENST00000411525 C15orf52Q6ZUT6 534 aaKnown RBP13.58□□□□□ -0.24
LINC00539-201ENST00000411525 SAMD7Q7Z3H4 446 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 KRT26Q7Z3Y9 468 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 FBXO33Q7Z6M2 555 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 USP48Q86UV5 1035 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 SPATA5Q8NB90 893 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 FAM227BQ96M60 508 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 IL25Q9H293 177 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 GGA1Q9UJY5 639 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 SCN9AQ15858 1988 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 MAST2Q6P0Q8 1798 aa13.58□□□□□ -0.24
LINC00539-201ENST00000411525 SEMA3EO15041 775 aa13.57□□□□□ -0.24
LINC00539-201ENST00000411525 ZBTB22O15209 634 aa13.57□□□□□ -0.24
LINC00539-201ENST00000411525 EPB41L2O43491 1005 aaKnown RBP13.57□□□□□ -0.24
LINC00539-201ENST00000411525 CYP2E1P05181 493 aaPredicted RBP13.57□□□□□ -0.24
LINC00539-201ENST00000411525 HUNKP57058 714 aa13.57□□□□□ -0.24
LINC00539-201ENST00000411525 TBC1D10BQ4KMP7 808 aaPredicted RBP13.57□□□□□ -0.24
LINC00539-201ENST00000411525 C2orf69Q8N8R5 385 aa13.57□□□□□ -0.24
LINC00539-201ENST00000411525 FAM84BQ96KN1 310 aaPredicted RBP13.57□□□□□ -0.24
LINC00539-201ENST00000411525 USP26Q9BXU7 913 aa13.57□□□□□ -0.24
LINC00539-201ENST00000411525 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.57□□□□□ -0.24
LINC00539-201ENST00000411525 ANO2Q9NQ90 1003 aa13.57□□□□□ -0.24
LINC00539-201ENST00000411525 PDS5AQ29RF7 1337 aaKnown RBP13.57□□□□□ -0.24
LINC00539-201ENST00000411525 MYO5AQ9Y4I1 1855 aaKnown RBP13.57□□□□□ -0.24
LINC00539-201ENST00000411525 SHTN1A0MZ66 631 aa13.56□□□□□ -0.24
LINC00539-201ENST00000411525 ZFYP08048 801 aaPredicted RBP13.56□□□□□ -0.24
LINC00539-201ENST00000411525 VIL1P09327 827 aaKnown RBP13.56□□□□□ -0.24
LINC00539-201ENST00000411525 HIBADHP31937 336 aaKnown RBP13.56□□□□□ -0.24
LINC00539-201ENST00000411525 DOK7Q18PE1 504 aa13.56□□□□□ -0.24
LINC00539-201ENST00000411525 CCDC102AQ96A19 550 aa13.56□□□□□ -0.24
LINC00539-201ENST00000411525 PIH1D3Q9NQM4 214 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms