RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 AIDAQ96BJ3 306 aa23.67■■□□□ 1.38
SF3A1-202ENST00000411423 VEZTQ9HBM0 779 aa23.67■■□□□ 1.38
SF3A1-202ENST00000411423 ZNF70Q9UC06 446 aaPredicted RBP23.67■■□□□ 1.38
SF3A1-202ENST00000411423 LBX1P52954 281 aa23.66■■□□□ 1.38
SF3A1-202ENST00000411423 FKBP1BP68106 108 aa23.66■■□□□ 1.38
SF3A1-202ENST00000411423 CDAN1Q8IWY9 1227 aa23.66■■□□□ 1.38
SF3A1-202ENST00000411423 TSKSQ9UJT2 592 aa23.66■■□□□ 1.38
SF3A1-202ENST00000411423 A0A1B0GUL7 405 aa23.65■■□□□ 1.38
SF3A1-202ENST00000411423 CTCFP49711 727 aaPredicted RBP23.65■■□□□ 1.38
SF3A1-202ENST00000411423 ATP8B2P98198 1209 aa23.65■■□□□ 1.38
SF3A1-202ENST00000411423 NOGQ13253 232 aa23.65■■□□□ 1.38
SF3A1-202ENST00000411423 CCDC102BQ68D86 513 aa23.65■■□□□ 1.38
SF3A1-202ENST00000411423 KIF23Q02241 960 aaPredicted RBP23.64■■□□□ 1.37
SF3A1-202ENST00000411423 SSH3Q8TE77 659 aa23.64■■□□□ 1.37
SF3A1-202ENST00000411423 XAGE2Q96GT9 111 aa23.64■■□□□ 1.37
SF3A1-202ENST00000411423 MYO1BO43795 1136 aa23.63■■□□□ 1.37
SF3A1-202ENST00000411423 PRDX5P30044 214 aa23.63■■□□□ 1.37
SF3A1-202ENST00000411423 RASA3Q14644 834 aa23.63■■□□□ 1.37
SF3A1-202ENST00000411423 NBPF12Q5TAG4 269 aaPredicted RBP23.63■■□□□ 1.37
SF3A1-202ENST00000411423 IFFO2Q5TF58 517 aa23.63■■□□□ 1.37
SF3A1-202ENST00000411423 CCDC102AQ96A19 550 aa23.63■■□□□ 1.37
SF3A1-202ENST00000411423 CACNB3P54284 484 aa23.62■■□□□ 1.37
SF3A1-202ENST00000411423 HDLBPQ00341 1268 aaKnown RBP23.62■■□□□ 1.37
SF3A1-202ENST00000411423 TTLL12Q14166 644 aaPredicted RBP23.62■■□□□ 1.37
SF3A1-202ENST00000411423 APOBEC3HQ6NTF7 200 aaKnown RBP23.62■■□□□ 1.37
SF3A1-202ENST00000411423 WDR66Q8TBY9 1149 aa23.62■■□□□ 1.37
SF3A1-202ENST00000411423 TCP10L2B9ZVM9 353 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 RASGRF1Q13972 1273 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 TEKT1Q969V4 418 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 ZDHHC15Q96MV8 337 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 TEPSINQ96N21 525 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 PRDM10Q9NQV6 1147 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 RCAN3Q9UKA8 241 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 SUGT1Q9Y2Z0 365 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 PPP2R3BQ9Y5P8 575 aa23.61■■□□□ 1.37
SF3A1-202ENST00000411423 ZBTB22O15209 634 aa23.6■■□□□ 1.37
SF3A1-202ENST00000411423 NF2P35240 595 aa23.6■■□□□ 1.37
SF3A1-202ENST00000411423 G3BP1Q13283 466 aaKnown RBP eCLIP23.6■■□□□ 1.371e-6■■□□□ 13.8
SF3A1-202ENST00000411423 DIXDC1Q155Q3 683 aa23.6■■□□□ 1.37
SF3A1-202ENST00000411423 LDLRAD1Q5T700 205 aa23.6■■□□□ 1.37
SF3A1-202ENST00000411423 CEP85Q6P2H3 762 aa23.6■■□□□ 1.37
SF3A1-202ENST00000411423 MRIQ9BWK5 157 aa23.6■■□□□ 1.37
SF3A1-202ENST00000411423 ANGEL1Q9UNK9 670 aaKnown RBP23.6■■□□□ 1.37
SF3A1-202ENST00000411423 SALL1Q9NSC2 1324 aa23.59■■□□□ 1.37
SF3A1-202ENST00000411423 CSRNP1Q96S65 589 aa23.59■■□□□ 1.37
SF3A1-202ENST00000411423 TMEM39BQ9GZU3 492 aa23.59■■□□□ 1.37
SF3A1-202ENST00000411423 GNL3LQ9NVN8 582 aaKnown RBP23.59■■□□□ 1.37
SF3A1-202ENST00000411423 DENND2AQ9ULE3 1009 aa23.59■■□□□ 1.37
SF3A1-202ENST00000411423 AKAP2Q9Y2D5 859 aa23.59■■□□□ 1.37
SF3A1-202ENST00000411423 SEMA3EO15041 775 aa23.58■■□□□ 1.37
SF3A1-202ENST00000411423 MAP3K11Q16584 847 aa23.58■■□□□ 1.37
SF3A1-202ENST00000411423 HHIPL2Q6UWX4 724 aa23.58■■□□□ 1.37
SF3A1-202ENST00000411423 PI16Q6UXB8 463 aa23.58■■□□□ 1.37
SF3A1-202ENST00000411423 NEUROD6Q96NK8 337 aa23.58■■□□□ 1.37
SF3A1-202ENST00000411423 MKRN3Q13064 507 aaKnown RBP23.57■■□□□ 1.36
SF3A1-202ENST00000411423 C20orf194Q5TEA3 1177 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 ARMC9Q7Z3E5 817 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 TNS4Q8IZW8 715 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 CLMNQ96JQ2 1002 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 BEGAINQ9BUH8 593 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 COG6Q9Y2V7 657 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 DAGLAQ9Y4D2 1042 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 MAST3O60307 1309 aa23.57■■□□□ 1.36
SF3A1-202ENST00000411423 USP2O75604 605 aaPredicted RBP23.56■■□□□ 1.36
SF3A1-202ENST00000411423 SURF6O75683 361 aaKnown RBP23.56■■□□□ 1.36
SF3A1-202ENST00000411423 MVPQ14764 893 aaKnown RBP23.56■■□□□ 1.36
SF3A1-202ENST00000411423 NOP58Q9Y2X3 529 aaKnown RBP23.56■■□□□ 1.36
SF3A1-202ENST00000411423 LDHBP07195 334 aaKnown RBP23.55■■□□□ 1.36
SF3A1-202ENST00000411423 HMG20BQ9P0W2 317 aa23.55■■□□□ 1.36
SF3A1-202ENST00000411423 OTOFQ9HC10 1997 aa23.54■■□□□ 1.36
SF3A1-202ENST00000411423 TNFAIP1Q13829 316 aa23.54■■□□□ 1.36
SF3A1-202ENST00000411423 SUPT20HL1Q3ZLR7 823 aa23.54■■□□□ 1.36
SF3A1-202ENST00000411423 TNNI3KQ59H18 835 aa23.54■■□□□ 1.36
SF3A1-202ENST00000411423 ZNF384Q8TF68 577 aa23.54■■□□□ 1.36
SF3A1-202ENST00000411423 FPGT-TNNI3KV9GXZ4 949 aa23.54■■□□□ 1.36
SF3A1-202ENST00000411423 PDS5AQ29RF7 1337 aaKnown RBP23.54■■□□□ 1.36
SF3A1-202ENST00000411423 ARID4AP29374 1257 aaPredicted RBP23.53■■□□□ 1.36
SF3A1-202ENST00000411423 CDC42EP5Q6NZY7 148 aa23.53■■□□□ 1.36
SF3A1-202ENST00000411423 DBNDD2Q9BQY9 259 aa23.53■■□□□ 1.36
SF3A1-202ENST00000411423 RNF186Q9NXI6 227 aa23.53■■□□□ 1.36
SF3A1-202ENST00000411423 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.53■■□□□ 1.36
SF3A1-202ENST00000411423 MCAMP43121 646 aa23.52■■□□□ 1.36
SF3A1-202ENST00000411423 GPR108Q9NPR9 543 aa23.52■■□□□ 1.36
SF3A1-202ENST00000411423 ZBTB40Q9NUA8 1239 aa23.52■■□□□ 1.36
SF3A1-202ENST00000411423 TLR7Q9NYK1 1049 aaKnown RBP23.52■■□□□ 1.36
SF3A1-202ENST00000411423 CA12O43570 354 aa23.51■■□□□ 1.35
SF3A1-202ENST00000411423 PPP1R12BO60237 982 aaPredicted RBP23.51■■□□□ 1.35
SF3A1-202ENST00000411423 GJA5P36382 358 aa23.51■■□□□ 1.35
SF3A1-202ENST00000411423 NFIAQ12857 509 aa23.51■■□□□ 1.35
SF3A1-202ENST00000411423 OS9Q13438 667 aaPredicted RBP23.51■■□□□ 1.35
SF3A1-202ENST00000411423 SPRYD7Q5W111 196 aa23.51■■□□□ 1.35
SF3A1-202ENST00000411423 TBC1D9Q6ZT07 1266 aa23.51■■□□□ 1.35
SF3A1-202ENST00000411423 SIRT2Q8IXJ6 389 aa23.51■■□□□ 1.35
SF3A1-202ENST00000411423 ABCF2Q9UG63 623 aa23.51■■□□□ 1.35
SF3A1-202ENST00000411423 TRPA1O75762 1119 aa23.5■■□□□ 1.35
SF3A1-202ENST00000411423 TNNI2P48788 182 aa23.5■■□□□ 1.35
SF3A1-202ENST00000411423 EXOC6BQ9Y2D4 811 aa23.5■■□□□ 1.35
SF3A1-202ENST00000411423 MYH2Q9UKX2 1941 aa23.5■■□□□ 1.35
SF3A1-202ENST00000411423 GAKO14976 1311 aa23.5■■□□□ 1.35
SF3A1-202ENST00000411423 MS4A1P11836 297 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms