RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GABPB1Q06547 395 aaPredicted RBP24.32■■□□□ 1.48
CTCF-202ENST00000401394 ZNF827Q17R98 1081 aa24.32■■□□□ 1.48
CTCF-202ENST00000401394 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.32■■□□□ 1.485e-7■■■□□ 17.6
CTCF-202ENST00000401394 PDE4BQ07343 736 aa24.31■■□□□ 1.48
CTCF-202ENST00000401394 CARD6Q9BX69 1037 aa24.31■■□□□ 1.48
CTCF-202ENST00000401394 CFAP100Q494V2 611 aa24.31■■□□□ 1.48
CTCF-202ENST00000401394 CCDC93Q567U6 631 aa24.31■■□□□ 1.48
CTCF-202ENST00000401394 SYNE3Q6ZMZ3 975 aa24.31■■□□□ 1.48
CTCF-202ENST00000401394 SERPINC1P01008 464 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 ZAP70P43403 619 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 ANO1Q5XXA6 986 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 FANCLQ9NW38 375 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 MRC1P22897 1456 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 GYS2P54840 703 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 GSDMDP57764 484 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 SHC4Q6S5L8 630 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 L2HGDHQ9H9P8 463 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 PLA2G4AP47712 749 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 NLRP12P59046 1061 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 KIF23Q02241 960 aaPredicted RBP24.3■■□□□ 1.48
CTCF-202ENST00000401394 GRIN1Q05586 938 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 KRT28Q7Z3Y7 464 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 CCDC82Q8N4S0 544 aa24.3■■□□□ 1.48
CTCF-202ENST00000401394 A0A0U1RQJ8 604 aa24.29■■□□□ 1.48
CTCF-202ENST00000401394 H2AFXP16104 143 aaPredicted RBP24.29■■□□□ 1.48
CTCF-202ENST00000401394 UBASH3AP57075 661 aa24.29■■□□□ 1.48
CTCF-202ENST00000401394 TRIM65Q6PJ69 517 aa24.29■■□□□ 1.48
CTCF-202ENST00000401394 ATRIPQ8WXE1 791 aa24.29■■□□□ 1.48
CTCF-202ENST00000401394 ZSWIM4Q9H7M6 989 aa24.29■■□□□ 1.48
CTCF-202ENST00000401394 FAM53CQ9NYF3 392 aa24.29■■□□□ 1.48
CTCF-202ENST00000401394 GRAMD1CQ8IYS0 662 aa24.29■■□□□ 1.48
CTCF-202ENST00000401394 IRX2Q9BZI1 471 aaPredicted RBP24.29■■□□□ 1.48
CTCF-202ENST00000401394 BMP6P22004 513 aa24.28■■□□□ 1.48
CTCF-202ENST00000401394 TRMT44Q8IYL2 757 aaKnown RBP24.28■■□□□ 1.48
CTCF-202ENST00000401394 VGLL3A8MV65 326 aa24.28■■□□□ 1.48
CTCF-202ENST00000401394 LONRF3Q496Y0 759 aa24.28■■□□□ 1.48
CTCF-202ENST00000401394 MICU3Q86XE3 530 aa24.28■■□□□ 1.48
CTCF-202ENST00000401394 INTS13Q9NVM9 706 aa24.28■■□□□ 1.48
CTCF-202ENST00000401394 PNMA6AP0CW24 399 aaPredicted RBP24.27■■□□□ 1.48
CTCF-202ENST00000401394 ADKP55263 362 aaKnown RBP24.27■■□□□ 1.48
CTCF-202ENST00000401394 ANKLE2Q86XL3 938 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 CMTR1Q8N1G2 835 aaKnown RBP24.27■■□□□ 1.48
CTCF-202ENST00000401394 PDILTQ8N807 584 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 WDR24Q96S15 920 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 DESI2Q9BSY9 194 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 NBPF3Q9H094 633 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 A0A1W2PQ27 194 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 A0A1W2PQ64 194 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 A0A1W2PQD8 194 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 TFRCP02786 760 aaKnown RBP24.27■■□□□ 1.48
CTCF-202ENST00000401394 SYKP43405 635 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 CYB5R4Q7L1T6 521 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 CCDC34Q96HJ3 373 aa24.27■■□□□ 1.48
CTCF-202ENST00000401394 MEGF6O75095 1541 aa24.27■■□□□ 1.47
CTCF-202ENST00000401394 EYA2O00167 538 aa24.26■■□□□ 1.47
CTCF-202ENST00000401394 CABP4P57796 275 aa24.26■■□□□ 1.47
CTCF-202ENST00000401394 MB21D2Q8IYB1 491 aaPredicted RBP24.26■■□□□ 1.47
CTCF-202ENST00000401394 H7C1W4 665 aa24.26■■□□□ 1.47
CTCF-202ENST00000401394 TATP17735 454 aaPredicted RBP24.26■■□□□ 1.47
CTCF-202ENST00000401394 ATP2B1P20020 1258 aa24.26■■□□□ 1.47
CTCF-202ENST00000401394 PLBD2Q8NHP8 589 aa24.26■■□□□ 1.47
CTCF-202ENST00000401394 KCNG4Q8TDN1 519 aa24.26■■□□□ 1.47
CTCF-202ENST00000401394 POLR3EQ9NVU0 708 aa24.26■■□□□ 1.47
CTCF-202ENST00000401394 ETF1P62495 437 aaKnown RBP24.25■■□□□ 1.47
CTCF-202ENST00000401394 VPS37DQ86XT2 251 aa24.25■■□□□ 1.47
CTCF-202ENST00000401394 NEK11Q8NG66 645 aa24.25■■□□□ 1.47
CTCF-202ENST00000401394 XAGE2Q96GT9 111 aa24.25■■□□□ 1.47
CTCF-202ENST00000401394 SASH3O75995 380 aa24.25■■□□□ 1.47
CTCF-202ENST00000401394 REXO1L1PQ8IX06 675 aa24.25■■□□□ 1.47
CTCF-202ENST00000401394 COBLO75128 1261 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 METTL16Q86W50 562 aaKnown RBP24.24■■□□□ 1.47
CTCF-202ENST00000401394 FAM89AQ96GI7 184 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 NOL10Q9BSC4 688 aaKnown RBP24.24■■□□□ 1.47
CTCF-202ENST00000401394 ALG1Q9BT22 464 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 MTF1Q14872 753 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 TBC1D10CQ8IV04 446 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 IMPACTQ9P2X3 320 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 APPP05067 770 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 IMMTQ16891 758 aaKnown RBP24.24■■□□□ 1.47
CTCF-202ENST00000401394 TTC39AQ5SRH9 613 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 TOGARAM2Q6ZUX3 1019 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 CCDC150Q8NCX0 1101 aa24.24■■□□□ 1.47
CTCF-202ENST00000401394 RGPD5Q99666 1765 aa24.23■■□□□ 1.47
CTCF-202ENST00000401394 ST5P78524 1137 aa24.23■■□□□ 1.47
CTCF-202ENST00000401394 KARSQ15046 597 aaKnown RBP24.23■■□□□ 1.47
CTCF-202ENST00000401394 IFNL2Q8IZJ0 200 aa24.23■■□□□ 1.47
CTCF-202ENST00000401394 PCDHA5Q9Y5H7 936 aa24.23■■□□□ 1.47
CTCF-202ENST00000401394 ZNF142P52746 1687 aaPredicted RBP24.23■■□□□ 1.47
CTCF-202ENST00000401394 GPAA1O43292 621 aa24.23■■□□□ 1.47
CTCF-202ENST00000401394 UBXN4Q92575 508 aa24.23■■□□□ 1.47
CTCF-202ENST00000401394 CWC25Q9NXE8 425 aaPredicted RBP24.23■■□□□ 1.47
CTCF-202ENST00000401394 ABCC6O95255 1503 aa24.23■■□□□ 1.47
CTCF-202ENST00000401394 B4E1Z4 1266 aa24.22■■□□□ 1.47
CTCF-202ENST00000401394 KRT40Q6A162 431 aa24.22■■□□□ 1.47
CTCF-202ENST00000401394 ZFP91Q96JP5 570 aaPredicted RBP24.22■■□□□ 1.47
CTCF-202ENST00000401394 SEC31BQ9NQW1 1179 aa24.22■■□□□ 1.47
CTCF-202ENST00000401394 ADAMTSL3P82987 1691 aa24.22■■□□□ 1.47
CTCF-202ENST00000401394 SNAP23O00161 211 aa24.22■■□□□ 1.47
CTCF-202ENST00000401394 CMA1P23946 247 aa24.22■■□□□ 1.47
CTCF-202ENST00000401394 IL15P40933 162 aaPredicted RBP24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms