RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 NAA16Q6N069 864 aaPredicted RBP25.46■■□□□ 1.67
CPNE1-204ENST00000397443 ADGRA1Q86SQ6 560 aa25.46■■□□□ 1.67
CPNE1-204ENST00000397443 TICAM2Q86XR7 235 aa25.46■■□□□ 1.67
CPNE1-204ENST00000397443 ZNF384Q8TF68 577 aa25.46■■□□□ 1.67
CPNE1-204ENST00000397443 SALL1Q9NSC2 1324 aa25.46■■□□□ 1.67
CPNE1-204ENST00000397443 NSUN4Q96CB9 384 aaKnown RBP25.45■■□□□ 1.67
CPNE1-204ENST00000397443 FER1L6Q2WGJ9 1857 aa25.45■■□□□ 1.66
CPNE1-204ENST00000397443 FAM205AQ6ZU69 1335 aa25.45■■□□□ 1.66
CPNE1-204ENST00000397443 VPS53Q5VIR6 699 aa25.45■■□□□ 1.66
CPNE1-204ENST00000397443 SCN9AQ15858 1988 aa25.45■■□□□ 1.66
CPNE1-204ENST00000397443 F8W031 263 aaPredicted RBP25.44■■□□□ 1.66
CPNE1-204ENST00000397443 ZBTB22O15209 634 aa25.44■■□□□ 1.66
CPNE1-204ENST00000397443 GPAA1O43292 621 aa25.44■■□□□ 1.66
CPNE1-204ENST00000397443 IARSP41252 1262 aaKnown RBP25.44■■□□□ 1.66
CPNE1-204ENST00000397443 TBC1D22AQ8WUA7 517 aa25.44■■□□□ 1.66
CPNE1-204ENST00000397443 AIDAQ96BJ3 306 aa25.44■■□□□ 1.66
CPNE1-204ENST00000397443 COL4A5P29400 1685 aa25.43■■□□□ 1.66
CPNE1-204ENST00000397443 YDJCA8MPS7 323 aa25.43■■□□□ 1.66
CPNE1-204ENST00000397443 DIXDC1Q155Q3 683 aa25.43■■□□□ 1.66
CPNE1-204ENST00000397443 CERS5Q8N5B7 392 aa25.43■■□□□ 1.66
CPNE1-204ENST00000397443 ARFGEF1Q9Y6D6 1849 aa25.43■■□□□ 1.66
CPNE1-204ENST00000397443 CCDC88AQ3V6T2 1871 aa25.42■■□□□ 1.66
CPNE1-204ENST00000397443 MBD4O95243 580 aa25.42■■□□□ 1.66
CPNE1-204ENST00000397443 ARMT1Q9H993 441 aa25.42■■□□□ 1.66
CPNE1-204ENST00000397443 ARHGAP27Q6ZUM4 889 aa25.41■■□□□ 1.66
CPNE1-204ENST00000397443 NIM1KQ8IY84 436 aa25.41■■□□□ 1.66
CPNE1-204ENST00000397443 USP17L3A6NCW0 530 aa25.41■■□□□ 1.66
CPNE1-204ENST00000397443 USP17L4A6NCW7 530 aa25.41■■□□□ 1.66
CPNE1-204ENST00000397443 USP17L1Q7RTZ2 530 aa25.41■■□□□ 1.66
CPNE1-204ENST00000397443 RAD17O75943 681 aa25.4■■□□□ 1.66
CPNE1-204ENST00000397443 RBM25P49756 843 aaKnown RBP25.39■■□□□ 1.66
CPNE1-204ENST00000397443 DYNLL1P63167 89 aaKnown RBP25.39■■□□□ 1.66
CPNE1-204ENST00000397443 STRIP1Q5VSL9 837 aa25.39■■□□□ 1.66
CPNE1-204ENST00000397443 LCORLQ8N3X6 602 aa25.39■■□□□ 1.66
CPNE1-204ENST00000397443 RBM8AQ9Y5S9 174 aaKnown RBP25.39■■□□□ 1.66
CPNE1-204ENST00000397443 HSPD1P10809 573 aaKnown RBP25.39■■□□□ 1.65
CPNE1-204ENST00000397443 MCCP23508 829 aa25.39■■□□□ 1.65
CPNE1-204ENST00000397443 MAGEB6P1A0A0J9YX57 407 aa25.38■■□□□ 1.65
CPNE1-204ENST00000397443 JDP2Q8WYK2 163 aa25.38■■□□□ 1.65
CPNE1-204ENST00000397443 MAP4K1Q92918 833 aa25.38■■□□□ 1.65
CPNE1-204ENST00000397443 VPS33BQ9H267 617 aa25.38■■□□□ 1.65
CPNE1-204ENST00000397443 AATFQ9NY61 560 aaKnown RBP eCLIP25.38■■□□□ 1.65
CPNE1-204ENST00000397443 PALD1Q9ULE6 856 aa25.38■■□□□ 1.65
CPNE1-204ENST00000397443 APPP05067 770 aa25.37■■□□□ 1.65
CPNE1-204ENST00000397443 DACT2Q5SW24 774 aa25.37■■□□□ 1.65
CPNE1-204ENST00000397443 STRBPQ96SI9 672 aaKnown RBP25.37■■□□□ 1.65
CPNE1-204ENST00000397443 TTF2Q9UNY4 1162 aaKnown RBP25.37■■□□□ 1.65
CPNE1-204ENST00000397443 MAST2Q6P0Q8 1798 aa25.37■■□□□ 1.65
CPNE1-204ENST00000397443 SCNN1DP51172 638 aa25.37■■□□□ 1.65
CPNE1-204ENST00000397443 PRELPP51888 382 aa25.37■■□□□ 1.65
CPNE1-204ENST00000397443 KIAA0825Q8IV33 1275 aa25.37■■□□□ 1.65
CPNE1-204ENST00000397443 ZNRF3Q9ULT6 936 aa25.37■■□□□ 1.65
CPNE1-204ENST00000397443 PRKAB2O43741 272 aa25.36■■□□□ 1.65
CPNE1-204ENST00000397443 YBX3P16989 372 aaKnown RBP eCLIP25.36■■□□□ 1.652e-6■■■■□ 21.8
CPNE1-204ENST00000397443 GSTO1P78417 241 aa25.36■■□□□ 1.65
CPNE1-204ENST00000397443 MYH2Q9UKX2 1941 aa25.36■■□□□ 1.65
CPNE1-204ENST00000397443 HSPA4P34932 840 aa25.35■■□□□ 1.65
CPNE1-204ENST00000397443 PSMD14O00487 310 aa25.35■■□□□ 1.65
CPNE1-204ENST00000397443 FOXP2O15409 715 aa25.35■■□□□ 1.65
CPNE1-204ENST00000397443 DSCC1Q9BVC3 393 aa25.35■■□□□ 1.65
CPNE1-204ENST00000397443 LTBP3Q9NS15 1303 aa25.35■■□□□ 1.65
CPNE1-204ENST00000397443 RIOK1Q9BRS2 568 aaKnown RBP25.34■■□□□ 1.65
CPNE1-204ENST00000397443 SLC4A4Q9Y6R1 1079 aa25.34■■□□□ 1.65
CPNE1-204ENST00000397443 ANP32AP39687 249 aaKnown RBP25.33■■□□□ 1.65
CPNE1-204ENST00000397443 MROH7-TTC4A0A0A0MT08 1334 aa25.33■■□□□ 1.65
CPNE1-204ENST00000397443 CREB3L3Q68CJ9 461 aa25.33■■□□□ 1.65
CPNE1-204ENST00000397443 RASEFQ8IZ41 740 aa25.33■■□□□ 1.65
CPNE1-204ENST00000397443 SDR42E1Q8WUS8 393 aa25.33■■□□□ 1.65
CPNE1-204ENST00000397443 KIF2CQ99661 725 aa25.33■■□□□ 1.65
CPNE1-204ENST00000397443 U3KPZ7 1027 aaPredicted RBP25.33■■□□□ 1.65
CPNE1-204ENST00000397443 EPB41L2O43491 1005 aaKnown RBP25.32■■□□□ 1.64
CPNE1-204ENST00000397443 LDHCP07864 332 aa25.32■■□□□ 1.64
CPNE1-204ENST00000397443 NECTIN1Q15223 517 aa25.32■■□□□ 1.64
CPNE1-204ENST00000397443 SUGT1Q9Y2Z0 365 aa25.32■■□□□ 1.64
CPNE1-204ENST00000397443 ZBTB12Q9Y330 459 aaPredicted RBP25.32■■□□□ 1.64
CPNE1-204ENST00000397443 SLC27A2O14975 620 aa25.31■■□□□ 1.64
CPNE1-204ENST00000397443 NOL10Q9BSC4 688 aaKnown RBP25.31■■□□□ 1.64
CPNE1-204ENST00000397443 ZNF646O15015 1829 aaPredicted RBP25.31■■□□□ 1.64
CPNE1-204ENST00000397443 FGAP02671 866 aa25.31■■□□□ 1.64
CPNE1-204ENST00000397443 BTDP43251 543 aa25.31■■□□□ 1.64
CPNE1-204ENST00000397443 CXCL9Q07325 125 aa25.31■■□□□ 1.64
CPNE1-204ENST00000397443 SLF2Q8IX21 1173 aa25.31■■□□□ 1.64
CPNE1-204ENST00000397443 RSBN1LQ6PCB5 846 aaPredicted RBP25.3■■□□□ 1.64
CPNE1-204ENST00000397443 SNX14Q9Y5W7 946 aa25.3■■□□□ 1.64
CPNE1-204ENST00000397443 TAF6LQ9Y6J9 622 aa25.3■■□□□ 1.64
CPNE1-204ENST00000397443 EPB41L4AQ9HCS5 686 aaPredicted RBP25.29■■□□□ 1.64
CPNE1-204ENST00000397443 DAGLAQ9Y4D2 1042 aa25.29■■□□□ 1.64
CPNE1-204ENST00000397443 GSG1L2A8MUP6 293 aa25.29■■□□□ 1.64
CPNE1-204ENST00000397443 PATL2C9JE40 543 aaKnown RBP25.29■■□□□ 1.64
CPNE1-204ENST00000397443 BAG3O95817 575 aa25.29■■□□□ 1.64
CPNE1-204ENST00000397443 GNAT2P19087 354 aa25.29■■□□□ 1.64
CPNE1-204ENST00000397443 RBM5P52756 815 aaKnown RBP eCLIP25.29■■□□□ 1.642e-6■■■□□ 15.7
CPNE1-204ENST00000397443 HAND2P61296 217 aa25.29■■□□□ 1.64
CPNE1-204ENST00000397443 FKBP1AP62942 108 aaKnown RBP25.29■■□□□ 1.64
CPNE1-204ENST00000397443 GPR162Q16538 588 aa25.29■■□□□ 1.64
CPNE1-204ENST00000397443 SH3RF3Q8TEJ3 882 aaPredicted RBP25.29■■□□□ 1.64
CPNE1-204ENST00000397443 ADAMTSL1Q8N6G6 1762 aa25.29■■□□□ 1.64
CPNE1-204ENST00000397443 PSME4Q14997 1843 aa25.28■■□□□ 1.64
CPNE1-204ENST00000397443 VIL1P09327 827 aaKnown RBP25.28■■□□□ 1.64
CPNE1-204ENST00000397443 ZKSCAN1P17029 563 aaPredicted RBP25.28■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms