RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 KRT86O43790 486 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 NOL3O60936 208 aaKnown RBP8.09□□□□□ -1.11
UPF2-203ENST00000397053 STK10O94804 968 aaKnown RBP8.09□□□□□ -1.11
UPF2-203ENST00000397053 CD19P15391 556 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CDAN1Q8IWY9 1227 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 KIFAP3Q92845 792 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 NAP1L3Q99457 506 aaPredicted RBP8.09□□□□□ -1.11
UPF2-203ENST00000397053 ESYT2A0FGR8 921 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 MCM7P33993 719 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 HSPA1LP34931 641 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 KRT83P78385 493 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 PPP2R5CQ13362 524 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 NFATC2IPQ8NCF5 419 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 GTF3C6Q969F1 213 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 PRKAG2Q9UGJ0 569 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 CASKIN1Q8WXD9 1431 aa8.09□□□□□ -1.11
UPF2-203ENST00000397053 ARHGEF35A5YM69 484 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 LETM2Q2VYF4 491 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 TTLL3Q9Y4R7 772 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 WDR7Q9Y4E6 1490 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 SPDYE16A6NNV3 312 aaPredicted RBP8.08□□□□□ -1.12
UPF2-203ENST00000397053 TRAF5O00463 557 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 SATB1Q01826 763 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 DLGAP5Q15398 846 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 SPDYE2Q495Y8 402 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 AKAP4Q5JQC9 854 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 LINS1Q8NG48 757 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 GLG1Q92896 1179 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 PAG1Q9NWQ8 432 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 BTG4Q9NY30 223 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 DENND2AQ9ULE3 1009 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 RBM8AQ9Y5S9 174 aaKnown RBP8.08□□□□□ -1.12
UPF2-203ENST00000397053 AKNAQ7Z591 1439 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 SMIM23A6NLE4 172 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 WDR46O15213 610 aaKnown RBP8.08□□□□□ -1.12
UPF2-203ENST00000397053 SPOPO43791 374 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 APBA3O96018 575 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 SSFA2P28290 1259 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 KRT2P35908 639 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 UAP1Q16222 522 aaPredicted RBP8.08□□□□□ -1.12
UPF2-203ENST00000397053 PLIN2Q99541 437 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 SAP30BPQ9UHR5 308 aaKnown RBP8.08□□□□□ -1.12
UPF2-203ENST00000397053 EXOC7Q9UPT5 735 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 IQUBQ8NA54 791 aa8.08□□□□□ -1.12
UPF2-203ENST00000397053 CDCA7Q9BWT1 371 aaPredicted RBP8.08□□□□□ -1.12
UPF2-203ENST00000397053 POLA1P09884 1462 aaPredicted RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 ABL1P00519 1130 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 TRIM27P14373 513 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 HIBADHP31937 336 aaKnown RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 UBE2HP62256 183 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 OTUD7BQ6GQQ9 843 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 IPO4Q8TEX9 1081 aaKnown RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 SELENOSQ9BQE4 189 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 LRRC9Q6ZRR7 1453 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 EPB41P11171 864 aaKnown RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 SLC1A4P43007 532 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 FAM193BQ96PV7 902 aaPredicted RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 CLSTN2Q9H4D0 955 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.07□□□□□ -1.12
UPF2-203ENST00000397053 MBIPQ9NS73 344 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 SH3TC1Q8TE82 1336 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 VIMP08670 466 aaKnown RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 KRT19P08727 400 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 GTF2F1P35269 517 aaKnown RBP eCLIP8.07□□□□□ -1.12
UPF2-203ENST00000397053 HAUS3Q68CZ6 603 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 VPS52Q8N1B4 723 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 PAGR1Q9BTK6 254 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 GLT8D2Q9H1C3 349 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 KCNK9Q9NPC2 374 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 FAM184BQ9ULE4 1060 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 STX17P56962 302 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 PARP10Q53GL7 1025 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 SEL1L2Q5TEA6 688 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 EPSTI1Q96J88 318 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 CTAGE9A4FU28 777 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 MAPK8IP2Q13387 824 aaPredicted RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 TNFAIP1Q13829 316 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 PLCB4Q15147 1175 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 LIN9Q5TKA1 542 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 Q6ZUG5 572 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 SV2BQ7L1I2 683 aa8.07□□□□□ -1.12
UPF2-203ENST00000397053 GPR161Q8N6U8 529 aaKnown RBP8.07□□□□□ -1.12
UPF2-203ENST00000397053 SPTLC2O15270 562 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 RILPL1Q5EBL4 403 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 MUM1L1Q5H9M0 696 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 ARHGAP27Q6ZUM4 889 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 ANKS4BQ8N8V4 417 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 DCAF5Q96JK2 942 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 PPIP5K2O43314 1243 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 MSL1Q68DK7 614 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 ZNF830Q96NB3 372 aaPredicted RBP8.06□□□□□ -1.12
UPF2-203ENST00000397053 TNRQ92752 1358 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 RNF113AO15541 343 aaKnown RBP8.06□□□□□ -1.12
UPF2-203ENST00000397053 ADCY5O95622 1261 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 TNFAIP3P21580 790 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 DCUN1D2Q6PH85 259 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 AFAP1L2Q8N4X5 818 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 CARD10Q9BWT7 1032 aa8.06□□□□□ -1.12
UPF2-203ENST00000397053 LUC7L2Q9Y383 392 aaKnown RBP8.06□□□□□ -1.12
UPF2-203ENST00000397053 OPA1O60313 960 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms