RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ZBTB7BO15156 539 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 GCKP35557 465 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 PDE1CQ14123 709 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 DBN1Q16643 649 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 DTHD1Q6ZMT9 781 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 CEP128Q6ZU80 1094 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 TESK2Q96S53 571 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 ARID5AQ03989 594 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 CCDC122Q5T0U0 273 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 LLPHQ9BRT6 129 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 SYNCQ9H7C4 482 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 MAGEB6P1A0A0J9YX57 407 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 MTHFSDQ2M296 383 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 SLC4A8Q2Y0W8 1093 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 CLSTN2Q9H4D0 955 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 FLT4P35916 1363 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 WDR78Q5VTH9 848 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 GBP7Q8N8V2 638 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 PPFIBP2Q8ND30 876 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 RRAGDQ9NQL2 400 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 HELLSQ9NRZ9 838 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 AOX1Q06278 1338 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 A0A1B0GVL5 298 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 GNA11P29992 359 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 SH2D4BQ5SQS7 431 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 CHST3Q7LGC8 479 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 IFT81Q8WYA0 676 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 RPS6KB1P23443 525 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 RILPL1Q5EBL4 403 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 MYRIPQ8NFW9 859 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 GTF3C6Q969F1 213 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 SAMD15Q9P1V8 674 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 TTF2Q9UNY4 1162 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 PTPRKQ15262 1439 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 U2AF2P26368 475 aaKnown RBP eCLIP11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 CHMP4BP1P59074 171 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 SBNO2Q9Y2G9 1366 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 CCDC50Q8IVM0 306 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 RRP36Q96EU6 259 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 IGSF3O75054 1194 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 GABPB1Q06547 395 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 SLC39A6Q13433 755 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 NAPGQ99747 312 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 IMPG2Q9BZV3 1241 aa11.53□□□□□ -0.56
LIMCH1-203ENST00000396595 A6NNZ2 444 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 WDHD1O75717 1129 aaPredicted RBP11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 ATP6V1AP38606 617 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 LACTBP83111 547 aaPredicted RBP11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 TUBB8Q3ZCM7 444 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 NBPF6Q5VWK0 638 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 NBPF5PQ86XG9 351 aaPredicted RBP11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 ZCRB1Q8TBF4 217 aaKnown RBP11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 NBPF4Q96M43 638 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 IMPACTQ9P2X3 320 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 DUOX2Q9NRD8 1548 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 UGGT2Q9NYU1 1516 aa11.52□□□□□ -0.56
LIMCH1-203ENST00000396595 RIOK3O14730 519 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 WHAMMP3Q1A5X7 153 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 GSTA5Q7RTV2 222 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 PPP1R9BQ96SB3 815 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 MTUS1Q9ULD2 1270 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 MAP3K5Q99683 1374 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 BUB1BO60566 1050 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 PCK1P35558 622 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 ZNF75DP51815 510 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 B4GALNT4Q76KP1 1039 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 IGSF22Q8N9C0 903 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 LRRC45Q96CN5 670 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 KDM2BQ8NHM5 1336 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 TLDC2A0PJX2 215 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 MCM7P33993 719 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 TFCP2Q12800 502 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 CALCOCO2Q13137 446 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 JAKMIP2Q96AA8 810 aa11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 IQSEC3Q9UPP2 1182 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-203ENST00000396595 RBBP5Q15291 538 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 POTEDQ86YR6 584 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 RGS22Q8NE09 1264 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 SMARCC2Q8TAQ2 1214 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 AFAP1L1Q8TED9 768 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 STIM2Q9P246 746 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 ATP6V0A2Q9Y487 856 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 MSH6P52701 1360 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 FAM13AO94988 1023 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 SETDB1Q15047 1291 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 ANO1Q5XXA6 986 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 MPHOSPH6Q99547 160 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 RPL13P26373 211 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 CWF19L2Q2TBE0 894 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 CCDC26Q8TAB7 109 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 ANAPC4Q9UJX5 808 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 LAMC3Q9Y6N6 1575 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 PLCG2P16885 1265 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 TNNI2P48788 182 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 NLRP3Q96P20 1036 aa11.51□□□□□ -0.57
LIMCH1-203ENST00000396595 CASQ2O14958 399 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 EEF2P13639 858 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 FANCCQ00597 558 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 VWA3BQ502W6 1294 aa11.5□□□□□ -0.57
LIMCH1-203ENST00000396595 TMEM87BQ96K49 555 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms