RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 CLUAP1Q96AJ1 413 aa11.08□□□□□ -0.64
ATG4A-205ENST00000394892 CLMNQ96JQ2 1002 aa11.08□□□□□ -0.64
ATG4A-205ENST00000394892 TDRD3Q9H7E2 651 aaKnown RBP11.08□□□□□ -0.64
ATG4A-205ENST00000394892 COPRSQ9NQ92 184 aa11.08□□□□□ -0.64
ATG4A-205ENST00000394892 SERPINA10Q9UK55 444 aa11.08□□□□□ -0.64
ATG4A-205ENST00000394892 KIF16BQ96L93 1317 aa11.08□□□□□ -0.64
ATG4A-205ENST00000394892 GJA5P36382 358 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 CACNB1Q02641 598 aaPredicted RBP11.07□□□□□ -0.64
ATG4A-205ENST00000394892 MTX1Q13505 466 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 MAP3K11Q16584 847 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 APOBEC3HQ6NTF7 200 aaKnown RBP11.07□□□□□ -0.64
ATG4A-205ENST00000394892 TMEM57Q8N5G2 664 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 LPIN2Q92539 896 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 R3HDMLQ9H3Y0 253 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 VEZTQ9HBM0 779 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 PAPPA2Q9BXP8 1791 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 CASP8AP2Q9UKL3 1982 aa11.07□□□□□ -0.64
ATG4A-205ENST00000394892 PNMA6EA0A0J9YXQ4 647 aa11.06□□□□□ -0.64
ATG4A-205ENST00000394892 USP2O75604 605 aaPredicted RBP11.06□□□□□ -0.64
ATG4A-205ENST00000394892 IFIT1P09914 478 aaKnown RBP11.06□□□□□ -0.64
ATG4A-205ENST00000394892 PHKA1P46020 1223 aa11.06□□□□□ -0.64
ATG4A-205ENST00000394892 CACNB3P54284 484 aa11.06□□□□□ -0.64
ATG4A-205ENST00000394892 MKRN3Q13064 507 aaKnown RBP11.06□□□□□ -0.64
ATG4A-205ENST00000394892 TTLL12Q14166 644 aaPredicted RBP11.06□□□□□ -0.64
ATG4A-205ENST00000394892 FRAT1Q92837 279 aaPredicted RBP11.06□□□□□ -0.64
ATG4A-205ENST00000394892 ANGEL1Q9UNK9 670 aaKnown RBP11.06□□□□□ -0.64
ATG4A-205ENST00000394892 HOXD11P31277 338 aaPredicted RBP11.05□□□□□ -0.64
ATG4A-205ENST00000394892 IL15P40933 162 aaPredicted RBP11.05□□□□□ -0.64
ATG4A-205ENST00000394892 RBM5P52756 815 aaKnown RBP eCLIP11.05□□□□□ -0.64
ATG4A-205ENST00000394892 TIMM10P62072 90 aa11.05□□□□□ -0.64
ATG4A-205ENST00000394892 ATP2B3Q16720 1220 aa11.05□□□□□ -0.64
ATG4A-205ENST00000394892 CAVIN4Q5BKX8 364 aa11.05□□□□□ -0.64
ATG4A-205ENST00000394892 PRPF38BQ5VTL8 546 aaKnown RBP11.05□□□□□ -0.64
ATG4A-205ENST00000394892 VPS37DQ86XT2 251 aa11.05□□□□□ -0.64
ATG4A-205ENST00000394892 TMEM39BQ9GZU3 492 aa11.05□□□□□ -0.64
ATG4A-205ENST00000394892 CEP126Q9P2H0 1117 aa11.05□□□□□ -0.64
ATG4A-205ENST00000394892 FBXO3Q9UK99 471 aa11.05□□□□□ -0.64
ATG4A-205ENST00000394892 TCP10L2B9ZVM9 353 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 SRGAP3O43295 1099 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 GNAI3P08754 354 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 SLC5A1P13866 664 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 PRDX5P30044 214 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 TM4SF4P48230 202 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 HDLBPQ00341 1268 aaKnown RBP11.04□□□□□ -0.64
ATG4A-205ENST00000394892 SREBF2Q12772 1141 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 TFCP2Q12800 502 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 DIXDC1Q155Q3 683 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 SPRYD7Q5W111 196 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 ZDHHC15Q96MV8 337 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 MRIQ9BWK5 157 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 HPS5Q9UPZ3 1129 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 PPP2R3BQ9Y5P8 575 aa11.04□□□□□ -0.64
ATG4A-205ENST00000394892 ZBTB22O15209 634 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 IPO8O15397 1037 aaKnown RBP11.03□□□□□ -0.64
ATG4A-205ENST00000394892 TBC1D8O95759 1140 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 CCDC102BQ68D86 513 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.03□□□□□ -0.64
ATG4A-205ENST00000394892 ARMC9Q7Z3E5 817 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 ZNF384Q8TF68 577 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 TBC1D22AQ8WUA7 517 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 CNKSR2Q8WXI2 1034 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 DAGLAQ9Y4D2 1042 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 ZBED9Q6R2W3 1325 aa11.03□□□□□ -0.64
ATG4A-205ENST00000394892 ZBTB7BO15156 539 aaPredicted RBP11.02□□□□□ -0.65
ATG4A-205ENST00000394892 FRAT2O75474 233 aaPredicted RBP11.02□□□□□ -0.65
ATG4A-205ENST00000394892 GNAI2P04899 355 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 RASGRF1Q13972 1273 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 POLA2Q14181 598 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 ZKSCAN2Q63HK3 967 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 HHIPL2Q6UWX4 724 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 ZNF296Q8WUU4 475 aaPredicted RBP11.02□□□□□ -0.65
ATG4A-205ENST00000394892 TEKT1Q969V4 418 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 WNK4Q96J92 1243 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 C1orf115Q9H7X2 142 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 SUGT1Q9Y2Z0 365 aa11.02□□□□□ -0.65
ATG4A-205ENST00000394892 A0A1B0GUL7 405 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 IGF2BP3O00425 579 aaKnown RBP eCLIP11.01□□□□□ -0.65
ATG4A-205ENST00000394892 MYO1BO43795 1136 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 CAP1Q01518 475 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 NFIAQ12857 509 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 SUPT20HL1Q3ZLR7 823 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 NOM1Q5C9Z4 860 aaKnown RBP11.01□□□□□ -0.65
ATG4A-205ENST00000394892 CDC42EP5Q6NZY7 148 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 PI16Q6UXB8 463 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 ZFPM1Q8IX07 1006 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 WDR66Q8TBY9 1149 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 SLC10A4Q96EP9 437 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 XAGE2Q96GT9 111 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 PTPN18Q99952 460 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.01□□□□□ -0.65
ATG4A-205ENST00000394892 SALL1Q9NSC2 1324 aa11.01□□□□□ -0.65
ATG4A-205ENST00000394892 GPR25O00155 361 aa11□□□□□ -0.65
ATG4A-205ENST00000394892 PPP1R12BO60237 982 aaPredicted RBP11□□□□□ -0.65
ATG4A-205ENST00000394892 FKTNO75072 461 aa11□□□□□ -0.65
ATG4A-205ENST00000394892 ALDH1A1P00352 501 aa11□□□□□ -0.65
ATG4A-205ENST00000394892 SLURP2P0DP57 97 aa11□□□□□ -0.65
ATG4A-205ENST00000394892 FBXO46Q6PJ61 603 aaPredicted RBP11□□□□□ -0.65
ATG4A-205ENST00000394892 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11□□□□□ -0.65
ATG4A-205ENST00000394892 PANK1Q8TE04 598 aa11□□□□□ -0.65
ATG4A-205ENST00000394892 SSH3Q8TE77 659 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms