RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 C10orf71Q711Q0 1435 aa9.59□□□□□ -0.87
LIMS1-203ENST00000393310 SMAP1Q8IYB5 467 aaPredicted RBP9.59□□□□□ -0.87
LIMS1-203ENST00000393310 NACAP1Q9BZK3 213 aa9.59□□□□□ -0.87
LIMS1-203ENST00000393310 PDGFDQ9GZP0 370 aaPredicted RBP9.59□□□□□ -0.87
LIMS1-203ENST00000393310 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.59□□□□□ -0.87
LIMS1-203ENST00000393310 MAP4K4O95819 1239 aaPredicted RBP9.59□□□□□ -0.88
LIMS1-203ENST00000393310 ARHGEF10LQ9HCE6 1279 aa9.59□□□□□ -0.88
LIMS1-203ENST00000393310 NOM1Q5C9Z4 860 aaKnown RBP9.58□□□□□ -0.88
LIMS1-203ENST00000393310 OTUD5Q96G74 571 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 PRDM16Q9HAZ2 1276 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 TNNT1P13805 278 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 HTRA3P83110 453 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 DDR1Q08345 913 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 DUSP27Q5VZP5 1158 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 PIK3R5Q8WYR1 880 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 DEF6Q9H4E7 631 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 GRK4P32298 578 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 MFSD14BQ5SR56 506 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 ERC1Q8IUD2 1116 aa9.58□□□□□ -0.88
LIMS1-203ENST00000393310 ATP5J2-PTCD1G3V325 749 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 DLL1O00548 723 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 LETM1O95202 739 aaPredicted RBP9.57□□□□□ -0.88
LIMS1-203ENST00000393310 PSMD14O00487 310 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 GZF1Q9H116 711 aaPredicted RBP9.57□□□□□ -0.88
LIMS1-203ENST00000393310 SLC24A3Q9HC58 644 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 RNF186Q9NXI6 227 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 RGS2P41220 211 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 KCNJ6P48051 423 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 PLS1Q14651 629 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 ZNF804BA4D1E1 1349 aa9.57□□□□□ -0.88
LIMS1-203ENST00000393310 H0YHG0 523 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 SARNPP82979 210 aaKnown RBP9.56□□□□□ -0.88
LIMS1-203ENST00000393310 KCTD2Q14681 263 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 SOCS4Q8WXH5 440 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 UIMC1Q96RL1 719 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 ZCCHC17Q9NP64 241 aaKnown RBP9.56□□□□□ -0.88
LIMS1-203ENST00000393310 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.56□□□□□ -0.889e-18■■■■■ 223.6
LIMS1-203ENST00000393310 GINM1Q9NU53 330 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 MYPNQ86TC9 1320 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 KIF20AO95235 890 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 GTF2A1P52655 376 aaPredicted RBP9.56□□□□□ -0.88
LIMS1-203ENST00000393310 MNS1Q8NEH6 495 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 UPF3BQ9BZI7 483 aaKnown RBP9.56□□□□□ -0.88
LIMS1-203ENST00000393310 PCCAP05165 728 aaPredicted RBP9.56□□□□□ -0.88
LIMS1-203ENST00000393310 CFAP100Q494V2 611 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 VPS53Q5VIR6 699 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 WRNIP1Q96S55 665 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 HPS5Q9UPZ3 1129 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 SUGT1Q9Y2Z0 365 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 TCP10L2B9ZVM9 353 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 SH3BP5O60239 455 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 AOC2O75106 756 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 SGIP1Q9BQI5 828 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 ELP3Q9H9T3 547 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 LGR6Q9HBX8 967 aa9.56□□□□□ -0.88
LIMS1-203ENST00000393310 MAP3K12Q12852 859 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 EXOC8Q8IYI6 725 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 ZBTB38Q8NAP3 1195 aaPredicted RBP9.55□□□□□ -0.88
LIMS1-203ENST00000393310 DNAAF4Q8WXU2 420 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 ZBBXA8MT70 800 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 LIG1P18858 919 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 HOXA10P31260 410 aaPredicted RBP9.55□□□□□ -0.88
LIMS1-203ENST00000393310 CCDC181Q5TID7 509 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 IRS2Q9Y4H2 1338 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 TBC1D8O95759 1140 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 ANKRD23Q86SG2 305 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 RNF180Q86T96 592 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 IPO9Q96P70 1041 aaKnown RBP9.55□□□□□ -0.88
LIMS1-203ENST00000393310 PAGR1Q9BTK6 254 aa9.55□□□□□ -0.88
LIMS1-203ENST00000393310 CAMTA2O94983 1202 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 GJB1P08034 283 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 RAG1P15918 1043 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 PSMC4P43686 418 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 CCT4P50991 539 aaKnown RBP9.54□□□□□ -0.88
LIMS1-203ENST00000393310 FOSBP53539 338 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 KSR2Q6VAB6 950 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.54□□□□□ -0.88
LIMS1-203ENST00000393310 CXCL11O14625 94 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 MAFGO15525 162 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 UBE4AQ14139 1066 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 TRIM6-TRIM34B2RNG4 842 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 ADCY3O60266 1144 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 ZBED4O75132 1171 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 UBE3BQ7Z3V4 1068 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 FAM122AQ96E09 287 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 CWC15Q9P013 229 aaKnown RBP9.54□□□□□ -0.88
LIMS1-203ENST00000393310 CLRN2A0PK11 232 aa9.54□□□□□ -0.88
LIMS1-203ENST00000393310 SLC10A3P09131 477 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 IFT57Q9NWB7 429 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 TOPAZ1Q8N9V7 1692 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 IBTKQ9P2D0 1353 aaPredicted RBP9.53□□□□□ -0.88
LIMS1-203ENST00000393310 FZD9O00144 591 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 ALDH1L1O75891 902 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 SAPCD2Q86UD0 394 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 FAM89AQ96GI7 184 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 EHMT1Q9H9B1 1298 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 NALCNQ8IZF0 1738 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 NFKBIEO00221 500 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 IFIT2P09913 472 aaKnown RBP9.53□□□□□ -0.88
LIMS1-203ENST00000393310 MAPK4P31152 587 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms