RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 SH3TC1Q8TE82 1336 aa12.17□□□□□ -0.46
CALD1-203ENST00000393118 FOXO4P98177 505 aa12.17□□□□□ -0.46
CALD1-203ENST00000393118 CTDSPL2Q05D32 466 aa12.17□□□□□ -0.46
CALD1-203ENST00000393118 KLHL10Q6JEL2 608 aa12.17□□□□□ -0.46
CALD1-203ENST00000393118 NSUN7Q8NE18 718 aaKnown RBP12.17□□□□□ -0.46
CALD1-203ENST00000393118 CDC5LQ99459 802 aaKnown RBP12.17□□□□□ -0.46
CALD1-203ENST00000393118 VIRMAQ69YN4 1812 aaKnown RBP12.17□□□□□ -0.46
CALD1-203ENST00000393118 TMC6Q7Z403 805 aa12.17□□□□□ -0.46
CALD1-203ENST00000393118 LMOD1P29536 600 aaPredicted RBP12.16□□□□□ -0.46
CALD1-203ENST00000393118 GIGYF2Q6Y7W6 1299 aaKnown RBP12.16□□□□□ -0.46
CALD1-203ENST00000393118 WASF1Q92558 559 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 GJB4Q9NTQ9 266 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 ANGEL1Q9UNK9 670 aaKnown RBP12.16□□□□□ -0.46
CALD1-203ENST00000393118 FAM160A1Q05DH4 1040 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 PUM3Q15397 648 aaKnown RBP12.16□□□□□ -0.46
CALD1-203ENST00000393118 ZBTB9Q96C00 473 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 TMX1Q9H3N1 280 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 MAP3K15Q6ZN16 1313 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 SFPQP23246 707 aaKnown RBP eCLIP12.16□□□□□ -0.46
CALD1-203ENST00000393118 SKIDA1Q1XH10 827 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 CCDC102BQ68D86 513 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 NAA16Q6N069 864 aaPredicted RBP12.16□□□□□ -0.46
CALD1-203ENST00000393118 NGLY1Q96IV0 654 aa12.16□□□□□ -0.46
CALD1-203ENST00000393118 A0A0G2JLW4 131 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 RABL6Q3YEC7 729 aaPredicted RBP12.15□□□□□ -0.46
CALD1-203ENST00000393118 STOX1Q6ZVD7 989 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 ATG9AQ7Z3C6 839 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 MARCH6O60337 910 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 RFX5P48382 616 aaPredicted RBP12.15□□□□□ -0.46
CALD1-203ENST00000393118 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.15□□□□□ -0.46
CALD1-203ENST00000393118 V9GYY5 206 aaPredicted RBP12.15□□□□□ -0.46
CALD1-203ENST00000393118 CCDC196A0A1B0GTZ2 297 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 POLR3GO15318 223 aaPredicted RBP12.15□□□□□ -0.46
CALD1-203ENST00000393118 ZNF500O60304 480 aaPredicted RBP12.15□□□□□ -0.46
CALD1-203ENST00000393118 SCARF1Q14162 830 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 PTPN14Q15678 1187 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 RTN1Q16799 776 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 IQCA1Q86XH1 822 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 ANKRD18AQ8IVF6 992 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 RNF41Q9H4P4 317 aaPredicted RBP12.15□□□□□ -0.46
CALD1-203ENST00000393118 BCL2L12Q9HB09 334 aa12.15□□□□□ -0.46
CALD1-203ENST00000393118 SMTNL1A8MU46 457 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 ZPR1O75312 459 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 PRDM1O75626 825 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 LRMPQ12912 555 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 COL9A3Q14050 684 aaPredicted RBP12.14□□□□□ -0.47
CALD1-203ENST00000393118 SPECC1Q5M775 1068 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 MEX3CQ5U5Q3 659 aaKnown RBP12.14□□□□□ -0.47
CALD1-203ENST00000393118 TMEM87AQ8NBN3 555 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 SKILP12757 684 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 NLRP10Q86W26 655 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 CMTR1Q8N1G2 835 aaKnown RBP12.14□□□□□ -0.47
CALD1-203ENST00000393118 GPR108Q9NPR9 543 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 MRVI1Q9Y6F6 885 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 TNS3Q68CZ2 1445 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 PDE6AP16499 860 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 KCNQ4P56696 695 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 LPIN2Q92539 896 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 ANKIB1Q9P2G1 1089 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 FER1L4A9Z1Z3 1794 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 UTYO14607 1347 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 MEGF6O75095 1541 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 CIAO1O76071 339 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 CAVIN2O95810 425 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 SPATA5Q8NB90 893 aa12.14□□□□□ -0.47
CALD1-203ENST00000393118 ZNF274Q96GC6 653 aaPredicted RBP12.14□□□□□ -0.47
CALD1-203ENST00000393118 ZNF609O15014 1411 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 PDE8BO95263 885 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 PDLIM2Q96JY6 352 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 SEC31BQ9NQW1 1179 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 RGPD8O14715 1765 aaPredicted RBP12.13□□□□□ -0.47
CALD1-203ENST00000393118 TPM1P09493 284 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 BCAMP50895 628 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 KRT23Q9C075 422 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 KNDC1Q76NI1 1749 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 AKAP12Q02952 1782 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 hCG_1642624A0A1W2PR95 340 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 RESTQ13127 1097 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 ANO1Q5XXA6 986 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 DZIP1Q86YF9 867 aaKnown RBP12.13□□□□□ -0.47
CALD1-203ENST00000393118 MNS1Q8NEH6 495 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 TTLL11Q8NHH1 800 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 WWC3Q9ULE0 1092 aa12.13□□□□□ -0.47
CALD1-203ENST00000393118 KDM6AO15550 1401 aaPredicted RBP12.13□□□□□ -0.47
CALD1-203ENST00000393118 NBPF5PQ86XG9 351 aaPredicted RBP12.12□□□□□ -0.47
CALD1-203ENST00000393118 TMX4Q9H1E5 349 aaPredicted RBP12.12□□□□□ -0.47
CALD1-203ENST00000393118 NRBP1Q9UHY1 535 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 PIK3C2AO00443 1686 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 ZSCAN20P17040 1043 aaPredicted RBP12.12□□□□□ -0.47
CALD1-203ENST00000393118 USP5P45974 858 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 ZNF75DP51815 510 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 KRT40Q6A162 431 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 BRAPQ7Z569 592 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 CATIPQ7Z7H3 387 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 CTCFLQ8NI51 663 aaPredicted RBP12.12□□□□□ -0.47
CALD1-203ENST00000393118 PGBD1Q96JS3 809 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 AIFM3Q96NN9 605 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 ATG3Q9NT62 314 aa12.12□□□□□ -0.47
CALD1-203ENST00000393118 PATL2C9JE40 543 aaKnown RBP12.12□□□□□ -0.47
CALD1-203ENST00000393118 MCAMP43121 646 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms