RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 RILPQ96NA2 401 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 BAG5Q9UL15 447 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 DYTNA2CJ06 578 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 SAMD1Q6SPF0 538 aaPredicted RBP9.77□□□□□ -0.85
LIG3-202ENST00000378526 MMS22LQ6ZRQ5 1243 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 NGDNQ8NEJ9 315 aaKnown RBP9.77□□□□□ -0.85
LIG3-202ENST00000378526 BAG2O95816 211 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 SYT10Q6XYQ8 523 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 CCDC138Q96M89 665 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 MTMR7Q9Y216 660 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 ARHGAP10A1A4S6 786 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 ATP8B1O43520 1251 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 RWDD2BP57060 319 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 AKNAQ7Z591 1439 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 TTC4O95801 387 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 WDHD1O75717 1129 aaPredicted RBP9.76□□□□□ -0.85
LIG3-202ENST00000378526 SUN1O94901 812 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 MAGEA9P43362 315 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 POLR3CQ9BUI4 534 aaPredicted RBP9.76□□□□□ -0.85
LIG3-202ENST00000378526 CNGB3Q9NQW8 809 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 TMED10P49755 219 aaKnown RBP9.76□□□□□ -0.85
LIG3-202ENST00000378526 APBA1Q02410 837 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 UBL4BQ8N7F7 174 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 TSC1Q92574 1164 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 SYKP43405 635 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 CUL4BQ13620 913 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 IQCA1Q86XH1 822 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 RAB17Q9H0T7 212 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 RIOK3O14730 519 aaKnown RBP9.76□□□□□ -0.85
LIG3-202ENST00000378526 LIG3P49916 1009 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 TCERG1LQ5VWI1 586 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 KRT4P19013 534 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.76□□□□□ -0.85
LIG3-202ENST00000378526 WBP4O75554 376 aaKnown RBP9.76□□□□□ -0.85
LIG3-202ENST00000378526 APOA1P02647 267 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 S100BP04271 92 aaPredicted RBP9.76□□□□□ -0.85
LIG3-202ENST00000378526 GUCA1BQ9UMX6 200 aa9.76□□□□□ -0.85
LIG3-202ENST00000378526 TBC1D2Q9BYX2 928 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 UBA5Q9GZZ9 404 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 C10orf88Q9H8K7 445 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 PSMA7O14818 248 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 MRPL28Q13084 256 aaKnown RBP9.75□□□□□ -0.85
LIG3-202ENST00000378526 ARMCX6Q7L4S7 300 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 SSFA2P28290 1259 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 EIF3DO15371 548 aaKnown RBP eCLIP9.75□□□□□ -0.85
LIG3-202ENST00000378526 ESRRBO95718 433 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 SERPINB10P48595 397 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 SSRP1Q08945 709 aaKnown RBP9.75□□□□□ -0.85
LIG3-202ENST00000378526 L3MBTL2Q969R5 705 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 ZNF830Q96NB3 372 aaPredicted RBP9.75□□□□□ -0.85
LIG3-202ENST00000378526 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.75□□□□□ -0.85
LIG3-202ENST00000378526 TAF11Q15544 211 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 KIF2CQ99661 725 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 PLCB4Q15147 1175 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 TBC1D10BQ4KMP7 808 aaPredicted RBP9.75□□□□□ -0.85
LIG3-202ENST00000378526 CEP70Q8NHQ1 597 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 SIL1Q9H173 461 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 CCDC18Q5T9S5 1454 aa9.75□□□□□ -0.85
LIG3-202ENST00000378526 RHOBTB1O94844 696 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 SYCP3Q8IZU3 236 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 IDEP14735 1019 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 ZBTB41Q5SVQ8 909 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 LRGUKQ96M69 825 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 HAUS2Q9NVX0 235 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 ELF2Q15723 593 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 VWA3BQ502W6 1294 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 BCAS4Q8TDM0 211 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 HDAC4P56524 1084 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 RSBN1LQ6PCB5 846 aaPredicted RBP9.74□□□□□ -0.85
LIG3-202ENST00000378526 FLCNQ8NFG4 579 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 UTP14AQ9BVJ6 771 aaKnown RBP9.74□□□□□ -0.85
LIG3-202ENST00000378526 ARHGAP44Q17R89 818 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 CERS3Q8IU89 383 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 FRMD4BQ9Y2L6 1034 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 ARIH1Q9Y4X5 557 aaPredicted RBP9.74□□□□□ -0.85
LIG3-202ENST00000378526 MCF2P10911 925 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 PLCB3Q01970 1234 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 DHX9Q08211 1270 aaKnown RBP9.74□□□□□ -0.85
LIG3-202ENST00000378526 NEK11Q8NG66 645 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 SPC25Q9HBM1 224 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 STMN3Q9NZ72 180 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 NOP53Q9NZM5 478 aaKnown RBP9.74□□□□□ -0.85
LIG3-202ENST00000378526 TEKT2Q9UIF3 430 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 ZMYND8Q9ULU4 1186 aaPredicted RBP9.74□□□□□ -0.85
LIG3-202ENST00000378526 ACBD5Q5T8D3 534 aaPredicted RBP9.74□□□□□ -0.85
LIG3-202ENST00000378526 CFAP61Q8NHU2 1237 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 PHKBQ93100 1093 aa9.74□□□□□ -0.85
LIG3-202ENST00000378526 AKR1B15C9JRZ8 316 aaPredicted RBP9.73□□□□□ -0.85
LIG3-202ENST00000378526 STX2P32856 288 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 TLK2Q86UE8 772 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 TRIM63Q969Q1 353 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 CHUKO15111 745 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 RGS16O15492 202 aaPredicted RBP9.73□□□□□ -0.85
LIG3-202ENST00000378526 CDR2Q01850 454 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 KLHL34Q8N239 644 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 RBSNQ9H1K0 784 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 LZTFL1Q9NQ48 299 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 CFAP221Q4G0U5 840 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 DNAJC17Q9NVM6 304 aaKnown RBP9.73□□□□□ -0.85
LIG3-202ENST00000378526 STK10O94804 968 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms