RNA–Protein interactions for RNA: ENST00000378105.4

PCDHGA1-201, Transcript of protocadherin gamma subfamily A, 1, humanhuman

APPRIS ALT2 BASIC

Gene PCDHGA1, Length 4,069 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1-201ENST00000378105 USP25Q9UHP3 1055 aa12.53□□□□□ -0.4
PCDHGA1-201ENST00000378105 ATP2B2Q01814 1243 aa12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 STK3Q13188 491 aa12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 GIMAP7Q8NHV1 300 aa12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 UPF3BQ9BZI7 483 aaKnown RBP12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 IGSF1Q8N6C5 1336 aa12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 MCTP2Q6DN12 878 aa12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 RHPN1Q8TCX5 695 aa12.52□□□□□ -0.4
PCDHGA1-201ENST00000378105 HCLS1P14317 486 aaPredicted RBP12.52□□□□□ -0.41
PCDHGA1-201ENST00000378105 LMAN1P49257 510 aa12.52□□□□□ -0.41
PCDHGA1-201ENST00000378105 USP4Q13107 963 aa12.52□□□□□ -0.41
PCDHGA1-201ENST00000378105 DDX46Q7L014 1031 aaKnown RBP12.52□□□□□ -0.41
PCDHGA1-201ENST00000378105 NBPF3Q9H094 633 aa12.52□□□□□ -0.41
PCDHGA1-201ENST00000378105 PLEKHA4Q9H4M7 779 aa12.52□□□□□ -0.41
PCDHGA1-201ENST00000378105 SMC3Q9UQE7 1217 aa12.52□□□□□ -0.41
PCDHGA1-201ENST00000378105 CEMIPQ8WUJ3 1361 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 TNRC6CQ9HCJ0 1690 aaKnown RBP12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 RAB11FIP3O75154 756 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 SRLQ86TD4 932 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 SMARCE1Q969G3 411 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 CDCA7Q9BWT1 371 aaPredicted RBP12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 WDR17Q8IZU2 1322 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 MARCH6O60337 910 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 ABCD1P33897 745 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 PRPF40AO75400 957 aaKnown RBP12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 ANKRD44Q8N8A2 993 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 SUDS3Q9H7L9 328 aaPredicted RBP12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 AKAP2Q9Y2D5 859 aa12.51□□□□□ -0.41
PCDHGA1-201ENST00000378105 GIGYF1O75420 1035 aaPredicted RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 NBPF7P0C2Y1 421 aaPredicted RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 CAVIN4Q5BKX8 364 aa12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 PDRG1Q9NUG6 133 aa12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 HIP1O00291 1037 aa12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 OATP04181 439 aa12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 ZSCAN29Q8IWY8 852 aaPredicted RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 NLRP3Q96P20 1036 aa12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 MAF1Q9H063 256 aa12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 EME2A4GXA9 379 aaPredicted RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 IRS4O14654 1257 aaPredicted RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 ALDH1L1O75891 902 aa12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 RBM6P78332 1123 aaKnown RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 PIAS4Q8N2W9 510 aaPredicted RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 ARHGEF1Q92888 912 aaKnown RBP12.5□□□□□ -0.41
PCDHGA1-201ENST00000378105 CA8P35219 290 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 TEX35Q5T0J7 233 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 CDC5LQ99459 802 aaKnown RBP12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 ECHDC1Q9NTX5 307 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 ZBTB40Q9NUA8 1239 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 SLC4A8Q2Y0W8 1093 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 JPH2Q9BR39 696 aaPredicted RBP12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 BICC1Q9H694 974 aaKnown RBP12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 APBA3O96018 575 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 ANKRD23Q86SG2 305 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 AIDAQ96BJ3 306 aa12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 CWC15Q9P013 229 aaKnown RBP12.49□□□□□ -0.41
PCDHGA1-201ENST00000378105 IKQ13123 557 aaPredicted RBP12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 PROSER3Q2NL68 480 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 CEP85Q6P2H3 762 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 TTLL7Q6ZT98 887 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 PYCARDQ9ULZ3 195 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 ATP8B2P98198 1209 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 TBC1D32Q96NH3 1257 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 LARP6Q9BRS8 491 aaKnown RBP12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 JAG2Q9Y219 1238 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 PYGLP06737 847 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 TPM1P09493 284 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 ELF2Q15723 593 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 INF2Q27J81 1249 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 JAKMIP1Q96N16 626 aaKnown RBP12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 UTP14AQ9BVJ6 771 aaKnown RBP12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 LAMB1P07942 1786 aa12.48□□□□□ -0.41
PCDHGA1-201ENST00000378105 MINDY4BA8MYZ0 360 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 ZBTB7BO15156 539 aaPredicted RBP12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 CTAGE5O15320 804 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 SLC5A1P13866 664 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 TRAPPC3LQ5T215 181 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 FBXO38Q6PIJ6 1188 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 TSHZ1Q6ZSZ6 1077 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 CCDC34Q96HJ3 373 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 SMC2O95347 1197 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 PSMA5P28066 241 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 GSCP56915 257 aaPredicted RBP12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 TRIM29Q14134 588 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 CCDC152Q4G0S7 254 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 AKNAD1Q5T1N1 836 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 ZNF594Q96JF6 807 aaPredicted RBP12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 KDM2BQ8NHM5 1336 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 KINO60870 393 aaKnown RBP12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 TPTE2Q6XPS3 522 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 GPT2Q8TD30 523 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 LAMA2P24043 3122 aaKnown RBP12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 MYH3P11055 1940 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 TRIM37O94972 964 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 SKILP12757 684 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 PRPF40BQ6NWY9 871 aaKnown RBP12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 FOXR1Q6PIV2 292 aa12.47□□□□□ -0.41
PCDHGA1-201ENST00000378105 NACAP1Q9BZK3 213 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms