RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 CRACR2BQ8N4Y2 399 aaPredicted RBP17.99■□□□□ 0.47
COL17A1-202ENST00000369733 PPM1EQ8WY54 764 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 TEX13AQ9BXU3 409 aaPredicted RBP17.99■□□□□ 0.47
COL17A1-202ENST00000369733 MTMR6Q9Y217 621 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 NR1I2O75469 434 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 TRIM14Q14142 442 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 HEATR3Q7Z4Q2 680 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 CRNKL1Q9BZJ0 848 aaKnown RBP17.99■□□□□ 0.47
COL17A1-202ENST00000369733 CABP5Q9NP86 173 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 KDM5CP41229 1560 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 CCDC172P0C7W6 258 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 MCM7P33993 719 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 NEK11Q8NG66 645 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 STMN4Q9H169 189 aaPredicted RBP17.99■□□□□ 0.47
COL17A1-202ENST00000369733 VPS16Q9H269 839 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 MAST1Q9Y2H9 1570 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 POGZQ7Z3K3 1410 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 A0A1W2PRG0 241 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 GOLGA6CA6NDK9 693 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 GOLGA6DP0CG33 693 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 MTX1Q13505 466 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 LRRC8AQ8IWT6 810 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 CUL5Q93034 780 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 GOLGA6AQ9NYA3 693 aa17.99■□□□□ 0.47
COL17A1-202ENST00000369733 RGS12O14924 1447 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 ZSCAN26Q16670 478 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 GPR161Q8N6U8 529 aaKnown RBP17.98■□□□□ 0.47
COL17A1-202ENST00000369733 LMBR1Q8WVP7 490 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 CNKSR2Q8WXI2 1034 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 NDUFAB1O14561 156 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 MLKLQ8NB16 471 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 TBC1D5Q92609 795 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 CDC5LQ99459 802 aaKnown RBP17.98■□□□□ 0.47
COL17A1-202ENST00000369733 STX8Q9UNK0 236 aa17.98■□□□□ 0.47
COL17A1-202ENST00000369733 USP19O94966 1318 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 TNNC1P63316 161 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 RILPL1Q5EBL4 403 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 UTP14CQ5TAP6 766 aaKnown RBP17.97■□□□□ 0.47
COL17A1-202ENST00000369733 CUTAO60888 179 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 CTNNA2P26232 953 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 INPP5BP32019 993 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 FBF1Q8TES7 1133 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 KRT13P13646 458 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 TNNI3KQ59H18 835 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 STXBP4Q6ZWJ1 553 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 FPGT-TNNI3KV9GXZ4 949 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 MAGI2Q86UL8 1455 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 SYNRGQ9UMZ2 1314 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 CALM1P0DP23 149 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 CALM2P0DP24 149 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 CALM3P0DP25 149 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 NFE2L3Q9Y4A8 694 aa17.97■□□□□ 0.47
COL17A1-202ENST00000369733 POTEDQ86YR6 584 aa17.96■□□□□ 0.47
COL17A1-202ENST00000369733 PAIP2Q9BPZ3 127 aaKnown RBP17.96■□□□□ 0.47
COL17A1-202ENST00000369733 VWA3AA6NCI4 1184 aa17.96■□□□□ 0.47
COL17A1-202ENST00000369733 POLR2DO15514 142 aaKnown RBP17.96■□□□□ 0.47
COL17A1-202ENST00000369733 UNC13AQ9UPW8 1703 aa17.96■□□□□ 0.47
COL17A1-202ENST00000369733 TBCAO75347 108 aaKnown RBP17.96■□□□□ 0.47
COL17A1-202ENST00000369733 CALML3P27482 149 aa17.96■□□□□ 0.47
COL17A1-202ENST00000369733 CCDC6Q16204 474 aa17.96■□□□□ 0.47
COL17A1-202ENST00000369733 C6orf163Q5TEZ5 329 aa17.96■□□□□ 0.47
COL17A1-202ENST00000369733 SYCP3Q8IZU3 236 aa17.96■□□□□ 0.47
COL17A1-202ENST00000369733 MRFAP1L1Q96HT8 127 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 MKRN1Q9UHC7 482 aaKnown RBP17.95■□□□□ 0.46
COL17A1-202ENST00000369733 GNAQP50148 359 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 GNAT2P19087 354 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 PRPHP41219 470 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 KRT28Q7Z3Y7 464 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 PLVAPQ9BX97 442 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 SMIM23A6NLE4 172 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 BAG3O95817 575 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 ZNF174Q15697 407 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 TMTC1Q8IUR5 882 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 JAKMIP2Q96AA8 810 aa17.95■□□□□ 0.46
COL17A1-202ENST00000369733 TSPY3P0CV98 308 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 TSPY8P0CW00 308 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 KLHDC4Q8TBB5 520 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 DBNDD2Q9BQY9 259 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 RABEP2Q9H5N1 569 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 KDM5AP29375 1690 aaKnown RBP17.94■□□□□ 0.46
COL17A1-202ENST00000369733 PLIN2Q99541 437 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 IQSEC3Q9UPP2 1182 aaPredicted RBP17.94■□□□□ 0.46
COL17A1-202ENST00000369733 BRD3Q15059 726 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 C8orf74Q6P047 294 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 DTHD1Q6ZMT9 781 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 SAMD15Q9P1V8 674 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 KDM5DQ9BY66 1539 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 GOLGA6BA6NDN3 693 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 HPDP32754 393 aaPredicted RBP17.94■□□□□ 0.46
COL17A1-202ENST00000369733 TTC6Q86TZ1 520 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 UBLCP1Q8WVY7 318 aaPredicted RBP17.94■□□□□ 0.46
COL17A1-202ENST00000369733 LRRC59Q96AG4 307 aaKnown RBP17.94■□□□□ 0.46
COL17A1-202ENST00000369733 MRVI1Q9Y6F6 885 aa17.94■□□□□ 0.46
COL17A1-202ENST00000369733 TLDC2A0PJX2 215 aa17.93■□□□□ 0.46
COL17A1-202ENST00000369733 NAPAP54920 295 aa17.93■□□□□ 0.46
COL17A1-202ENST00000369733 MAGEB6Q8N7X4 407 aa17.93■□□□□ 0.46
COL17A1-202ENST00000369733 RSRC1Q96IZ7 334 aaKnown RBP17.93■□□□□ 0.46
COL17A1-202ENST00000369733 YTHDC2Q9H6S0 1430 aaKnown RBP17.93■□□□□ 0.46
COL17A1-202ENST00000369733 MAP3K19Q56UN5 1328 aa17.93■□□□□ 0.46
COL17A1-202ENST00000369733 PTH1RQ03431 593 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms