RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 FNBP1Q96RU3 617 aa11.47□□□□□ -0.57
CLIP1-202ENST00000358808 TRIM6Q9C030 488 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-202ENST00000358808 PPANQ9NQ55 473 aaKnown RBP11.47□□□□□ -0.57
CLIP1-202ENST00000358808 FLIIQ13045 1269 aa11.46□□□□□ -0.57
CLIP1-202ENST00000358808 ALG1Q9BT22 464 aa11.46□□□□□ -0.57
CLIP1-202ENST00000358808 TMOD4Q9NZQ9 345 aa11.46□□□□□ -0.57
CLIP1-202ENST00000358808 NSMCE1Q8WV22 266 aa11.46□□□□□ -0.57
CLIP1-202ENST00000358808 CLASP1Q7Z460 1538 aa11.46□□□□□ -0.57
CLIP1-202ENST00000358808 ADGBQ8N7X0 1667 aa11.46□□□□□ -0.57
CLIP1-202ENST00000358808 PSMD6Q15008 389 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 ERCC6LQ2NKX8 1250 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 SEL1L2Q5TEA6 688 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 UBE3BQ7Z3V4 1068 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 NEK11Q8NG66 645 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 NLRP3Q96P20 1036 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 MTRF1LQ9UGC7 380 aaKnown RBP11.46□□□□□ -0.58
CLIP1-202ENST00000358808 STK10O94804 968 aaKnown RBP11.46□□□□□ -0.58
CLIP1-202ENST00000358808 ERCC3P19447 782 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 AFAP1L2Q8N4X5 818 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 GABPB2Q8TAK5 448 aaPredicted RBP11.46□□□□□ -0.58
CLIP1-202ENST00000358808 NCAPGQ9BPX3 1015 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 GDPD2Q9HCC8 539 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 GINS2Q9Y248 185 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 ARHGEF5Q12774 1597 aa11.46□□□□□ -0.58
CLIP1-202ENST00000358808 ERCC6L2Q5T890 1561 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 TLDC2A0PJX2 215 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 CAPZA3Q96KX2 299 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 CNNM2Q9H8M5 875 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 ECHDC1Q9NTX5 307 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 RSPH14Q9UHP6 348 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 PTPRCP08575 1304 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 TNPO1Q92973 898 aaKnown RBP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 PICK1Q9NRD5 415 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 ADCY5O95622 1261 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 RAPGEF1Q13905 1077 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 DCAF17Q5H9S7 520 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 CASQ2O14958 399 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 MCM7P33993 719 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 WDR66Q8TBY9 1149 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 STMN2Q93045 179 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 RAB3IPQ96QF0 476 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 NYXQ9GZU5 481 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 HECW2Q9P2P5 1572 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 MAGEB6P1A0A0J9YX57 407 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 NOP9Q86U38 636 aaKnown RBP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 TMTC2Q8N394 836 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 LEO1Q8WVC0 666 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 ZHX1Q9UKY1 873 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-202ENST00000358808 MTUS1Q9ULD2 1270 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 IVNS1ABPQ9Y6Y0 642 aa11.45□□□□□ -0.58
CLIP1-202ENST00000358808 ZNF165P49910 485 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 ITIH3Q06033 890 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 IFT81Q8WYA0 676 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 GTF3C6Q969F1 213 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 DHX58Q96C10 678 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 MRRFQ96E11 262 aaKnown RBP11.44□□□□□ -0.58
CLIP1-202ENST00000358808 ZC3H12CQ9C0D7 883 aaKnown RBP11.44□□□□□ -0.58
CLIP1-202ENST00000358808 SPAG1Q07617 926 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 CALCOCO2Q13137 446 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 HAUS2Q9NVX0 235 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 XRCC6P12956 609 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLIP1-202ENST00000358808 TRPC3Q13507 836 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 CCDC125Q86Z20 511 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 C19orf44Q9H6X5 657 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 MIPOL1Q8TD10 442 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 PPME1Q9Y570 386 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 PIK3R4Q99570 1358 aa11.44□□□□□ -0.58
CLIP1-202ENST00000358808 M0QZ92 97 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 CCT6AP40227 531 aaKnown RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 CPLX4Q7Z7G2 160 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 KIFAP3Q92845 792 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 DACT3Q96B18 629 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 HMG20BQ9P0W2 317 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 SAMD15Q9P1V8 674 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 NIP7Q9Y221 180 aaKnown RBP eCLIP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 RTCBQ9Y3I0 505 aaKnown RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 EIF2AK4Q9P2K8 1649 aaKnown RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 KRT83P78385 493 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 CEP85LQ5SZL2 805 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 NUF2Q9BZD4 464 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 FRMD4BQ9Y2L6 1034 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 NOP56O00567 594 aaKnown RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 RFC1P35251 1148 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 CEP57Q86XR8 500 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 PPFIBP2Q8ND30 876 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 SSH1Q8WYL5 1049 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 TTC37Q6PGP7 1564 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 CCDC171Q6TFL3 1326 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 BICDL2A1A5D9 508 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 INTS8Q75QN2 995 aaKnown RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 YEATS2Q9ULM3 1422 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 NSD2O96028 1365 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 CCDC169A6NNP5 214 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 ZFYP08048 801 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-202ENST00000358808 ANKRD13DQ6ZTN6 518 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 EYA3Q99504 573 aa11.43□□□□□ -0.58
CLIP1-202ENST00000358808 DIXDC1Q155Q3 683 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 ADGRL2O95490 1459 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms