RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ZNF853P0CG23 659 aa14.3□□□□□ -0.12
RTN3-204ENST00000354497 CALD1Q05682 793 aaKnown RBP14.3□□□□□ -0.12
RTN3-204ENST00000354497 TNFAIP1Q13829 316 aa14.3□□□□□ -0.12
RTN3-204ENST00000354497 VGLL4Q14135 290 aa14.3□□□□□ -0.12
RTN3-204ENST00000354497 ADAMTS8Q9UP79 889 aa14.3□□□□□ -0.12
RTN3-204ENST00000354497 CHMP3Q9Y3E7 222 aa14.3□□□□□ -0.12
RTN3-204ENST00000354497 OTOFQ9HC10 1997 aa14.3□□□□□ -0.12
RTN3-204ENST00000354497 ECM29Q5VYK3 1845 aa14.3□□□□□ -0.12
RTN3-204ENST00000354497 KIAA0100Q14667 2235 aaKnown RBP14.29□□□□□ -0.12
RTN3-204ENST00000354497 MYBBP1AQ9BQG0 1328 aaKnown RBP14.29□□□□□ -0.12
RTN3-204ENST00000354497 BRCA2P51587 3418 aa14.29□□□□□ -0.12
RTN3-204ENST00000354497 ANKRD18BA2A2Z9 1011 aa14.29□□□□□ -0.12
RTN3-204ENST00000354497 TCP10L2B9ZVM9 353 aa14.29□□□□□ -0.12
RTN3-204ENST00000354497 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.29□□□□□ -0.12
RTN3-204ENST00000354497 CDAN1Q8IWY9 1227 aa14.29□□□□□ -0.12
RTN3-204ENST00000354497 SPDYE1Q8NFV5 336 aaPredicted RBP14.29□□□□□ -0.12
RTN3-204ENST00000354497 STK31Q9BXU1 1019 aa14.29□□□□□ -0.12
RTN3-204ENST00000354497 CHMP4AQ9BY43 222 aa14.29□□□□□ -0.12
RTN3-204ENST00000354497 TDRD3Q9H7E2 651 aaKnown RBP14.29□□□□□ -0.12
RTN3-204ENST00000354497 ZNF70Q9UC06 446 aaPredicted RBP14.29□□□□□ -0.12
RTN3-204ENST00000354497 H7C1W4 665 aa14.28□□□□□ -0.12
RTN3-204ENST00000354497 PLIN1O60240 522 aa14.28□□□□□ -0.12
RTN3-204ENST00000354497 MAP3K9P80192 1104 aa14.28□□□□□ -0.12
RTN3-204ENST00000354497 LACTBP83111 547 aaPredicted RBP14.28□□□□□ -0.12
RTN3-204ENST00000354497 ZSWIM8A7E2V4 1837 aa14.28□□□□□ -0.12
RTN3-204ENST00000354497 IL1R1P14778 569 aa14.27□□□□□ -0.12
RTN3-204ENST00000354497 TNNI2P48788 182 aa14.27□□□□□ -0.12
RTN3-204ENST00000354497 MTFR1Q15390 333 aa14.27□□□□□ -0.12
RTN3-204ENST00000354497 SHISA4Q96DD7 197 aa14.27□□□□□ -0.12
RTN3-204ENST00000354497 TMEM39BQ9GZU3 492 aa14.27□□□□□ -0.12
RTN3-204ENST00000354497 TTF2Q9UNY4 1162 aaKnown RBP14.27□□□□□ -0.12
RTN3-204ENST00000354497 TLR2O60603 784 aa14.26□□□□□ -0.13
RTN3-204ENST00000354497 FKBP1AP62942 108 aaKnown RBP14.26□□□□□ -0.13
RTN3-204ENST00000354497 TSPYL6Q8N831 410 aa14.26□□□□□ -0.13
RTN3-204ENST00000354497 HTATIP2Q9BUP3 242 aa14.26□□□□□ -0.13
RTN3-204ENST00000354497 BIN2Q9UBW5 565 aaPredicted RBP14.26□□□□□ -0.13
RTN3-204ENST00000354497 IRS2Q9Y4H2 1338 aa14.26□□□□□ -0.13
RTN3-204ENST00000354497 APAF1O14727 1248 aa14.25□□□□□ -0.13
RTN3-204ENST00000354497 CETPP11597 493 aa14.25□□□□□ -0.13
RTN3-204ENST00000354497 IFIT5Q13325 482 aaKnown RBP14.25□□□□□ -0.13
RTN3-204ENST00000354497 GCKRQ14397 625 aa14.25□□□□□ -0.13
RTN3-204ENST00000354497 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.25□□□□□ -0.131e-10■■■□□ 14.8
RTN3-204ENST00000354497 RAET1EQ8TD07 263 aa14.25□□□□□ -0.13
RTN3-204ENST00000354497 PLA2G12BQ9BX93 195 aa14.25□□□□□ -0.13
RTN3-204ENST00000354497 MYH16Q9H6N6 1097 aa14.25□□□□□ -0.13
RTN3-204ENST00000354497 CPA4Q9UI42 421 aa14.25□□□□□ -0.13
RTN3-204ENST00000354497 BTBD19C9JJ37 291 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 FMNL1O95466 1100 aaPredicted RBP14.24□□□□□ -0.13
RTN3-204ENST00000354497 CSF1RP07333 972 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 PRMT2P55345 433 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 TAF7LQ5H9L4 462 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 MFSD14BQ5SR56 506 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 C15orf52Q6ZUT6 534 aaKnown RBP14.24□□□□□ -0.13
RTN3-204ENST00000354497 G2E3Q7L622 706 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 DZIP1LQ8IYY4 767 aaKnown RBP14.24□□□□□ -0.13
RTN3-204ENST00000354497 NKX2-3Q8TAU0 364 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 TEPSINQ96N21 525 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 NR2E3Q9Y5X4 410 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 TRIOBPQ9H2D6 2365 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 SPDYE5A6NIY4 337 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 GNRH1P01148 92 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 PSMC4P43686 418 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 SNAPC2Q13487 334 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 WRNIP1Q96S55 665 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 SERPINA10Q9UK55 444 aa14.24□□□□□ -0.13
RTN3-204ENST00000354497 CCL5P13501 91 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 GRK4P32298 578 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 CRKP46108 304 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 CACNB3P54284 484 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 ERO1BQ86YB8 467 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 TSR2Q969E8 191 aaKnown RBP14.23□□□□□ -0.13
RTN3-204ENST00000354497 ZKSCAN4Q969J2 545 aaPredicted RBP14.23□□□□□ -0.13
RTN3-204ENST00000354497 RNF208Q9H0X6 261 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 CNNM1Q9NRU3 951 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 SRRDQ9UH36 339 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 SNCAIPQ9Y6H5 919 aa14.23□□□□□ -0.13
RTN3-204ENST00000354497 MYPNQ86TC9 1320 aa14.22□□□□□ -0.13
RTN3-204ENST00000354497 IRF6O14896 467 aa14.22□□□□□ -0.13
RTN3-204ENST00000354497 OSBPP22059 807 aa14.22□□□□□ -0.13
RTN3-204ENST00000354497 HOXD10P28358 340 aa14.22□□□□□ -0.13
RTN3-204ENST00000354497 CASP7P55210 303 aa14.22□□□□□ -0.13
RTN3-204ENST00000354497 FKBP5Q13451 457 aaPredicted RBP14.22□□□□□ -0.13
RTN3-204ENST00000354497 ZNF594Q96JF6 807 aaPredicted RBP14.22□□□□□ -0.13
RTN3-204ENST00000354497 TRIM47Q96LD4 638 aa14.22□□□□□ -0.13
RTN3-204ENST00000354497 RIPOR2Q9Y4F9 1068 aa14.22□□□□□ -0.13
RTN3-204ENST00000354497 SZT2Q5T011 3432 aa14.21□□□□□ -0.13
RTN3-204ENST00000354497 FARP2O94887 1054 aaPredicted RBP14.21□□□□□ -0.13
RTN3-204ENST00000354497 CTGFP29279 349 aa14.21□□□□□ -0.13
RTN3-204ENST00000354497 GYG1P46976 350 aa14.21□□□□□ -0.13
RTN3-204ENST00000354497 GJA8P48165 433 aa14.21□□□□□ -0.13
RTN3-204ENST00000354497 UBXN2AP68543 259 aa14.21□□□□□ -0.13
RTN3-204ENST00000354497 DNAAF4Q8WXU2 420 aa14.21□□□□□ -0.13
RTN3-204ENST00000354497 ZCCHC17Q9NP64 241 aaKnown RBP14.21□□□□□ -0.13
RTN3-204ENST00000354497 FAM205AQ6ZU69 1335 aa14.21□□□□□ -0.14
RTN3-204ENST00000354497 ZBTB7BO15156 539 aaPredicted RBP14.2□□□□□ -0.14
RTN3-204ENST00000354497 GJB1P08034 283 aa14.2□□□□□ -0.14
RTN3-204ENST00000354497 FLIIQ13045 1269 aa14.2□□□□□ -0.14
RTN3-204ENST00000354497 CHAF1AQ13111 956 aaPredicted RBP14.2□□□□□ -0.14
RTN3-204ENST00000354497 PPIL2Q13356 520 aa14.2□□□□□ -0.14
RTN3-204ENST00000354497 CCDC57Q2TAC2 916 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms